Detailed information of component protein


Summary

Component ID T6CP001242
Component protein type TssH
T6SS ID (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (765 a.a.); Nucleotide sequence (2295 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) MXAN_RS23450
Coordinate (Strand) 6039303..6041597 (+)
NCBI ID WP_020478473.1
RefSeq NC_008095
Uniprot ID A0A7Y4HE87_MYXXA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.6e-31 501..661
ClpB_D2-small PF10431.11 1.3e-13 669..741
AAA PF00004.31 3.5e-07 234..339
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-764 MEKNVHLFVRTYPGLGVAAHVLTHPHLAAFAPTLHAARLDIAAVVGRLLKRGELWDEETHWSDLRQRKTTLTVRALEHGKMLSVPLRLTVLTHGVKARTARKGAPARQSLRVWVPRVDVKGTLHDAADLEPFVEEMVRHELYLASLDRLHSLAYVGEEQVETLSVPVRFRDTPRARALDAAKPQRRQAPPPGLAEASRCLNEEARAGLLERAWERDLEVSRLAEAVTSRTRASVLLVGPSSVGKTALVHELVQRAEAATTGSPLHGLEVFSSSGGRIMAGMRYLGQWQERVKHMVEALRVRQAVLHLDSLSELLSLGSGDTGLDVARQLLPALESGEVSLVLEATPEDVARAERTHAAFLQSLRHIAVAPLSAQAARNALQQASHRVGRARKVRFTPDALDRAGELTERFGSGPSPGGAVSLLRAASTEPGAAGEVNAASVTRAFCTRTGYPLELVDSAIRLDPDALLRRFRERVVGQDEATLLLRNLVVTLKTGLADPSRPLGAFLLLGPTGVGKTESALALAEYLFGDVARLARFDMAEYAAPGSATRLVGEAGGQQGSLARRVREQPFGVVLLDEIEKADAGVHDLLLQVLGEGRLTDATGRTVSFRNTVVLLTSNLGADSAGRSLGFGERGPLERAAHYLGAAAAFFRPELLNRLDRVVPYRALTEDVIQSLARRTLEAALSREGLSRRGVKVTFDEDVVKHLARTGFDARYGARPLKRAVEQQVVAPLARWLAAQATSAPPQVVLRVEAEGRIALSGLE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6836 - -


  Protein sequence: 765 a.a.    

>T6CP001242 NC_008095:6039303-6041597 [Myxococcus xanthus DK 1622] [TssH]
MEKNVHLFVRTYPGLGVAAHVLTHPHLAAFAPTLHAARLDIAAVVGRLLKRGELWDEETHWSDLRQRKTTLTVRALEHGK
MLSVPLRLTVLTHGVKARTARKGAPARQSLRVWVPRVDVKGTLHDAADLEPFVEEMVRHELYLASLDRLHSLAYVGEEQV
ETLSVPVRFRDTPRARALDAAKPQRRQAPPPGLAEASRCLNEEARAGLLERAWERDLEVSRLAEAVTSRTRASVLLVGPS
SVGKTALVHELVQRAEAATTGSPLHGLEVFSSSGGRIMAGMRYLGQWQERVKHMVEALRVRQAVLHLDSLSELLSLGSGD
TGLDVARQLLPALESGEVSLVLEATPEDVARAERTHAAFLQSLRHIAVAPLSAQAARNALQQASHRVGRARKVRFTPDAL
DRAGELTERFGSGPSPGGAVSLLRAASTEPGAAGEVNAASVTRAFCTRTGYPLELVDSAIRLDPDALLRRFRERVVGQDE
ATLLLRNLVVTLKTGLADPSRPLGAFLLLGPTGVGKTESALALAEYLFGDVARLARFDMAEYAAPGSATRLVGEAGGQQG
SLARRVREQPFGVVLLDEIEKADAGVHDLLLQVLGEGRLTDATGRTVSFRNTVVLLTSNLGADSAGRSLGFGERGPLERA
AHYLGAAAAFFRPELLNRLDRVVPYRALTEDVIQSLARRTLEAALSREGLSRRGVKVTFDEDVVKHLARTGFDARYGARP
LKRAVEQQVVAPLARWLAAQATSAPPQVVLRVEAEGRIALSGLE*

  Nucleotide sequence: 2295 bp    

>T6CP001242 NC_008095:6039303-6041597 [Myxococcus xanthus DK 1622] [TssH]
ATGGAAAAGAACGTCCACCTCTTCGTGCGCACCTATCCCGGGCTGGGCGTGGCGGCGCACGTCCTCACCCACCCGCACCT
GGCGGCCTTCGCGCCGACGCTGCACGCCGCGAGGCTCGACATCGCTGCGGTGGTGGGGCGGCTCCTCAAGCGAGGAGAGC
TCTGGGACGAGGAGACCCACTGGAGCGATTTGCGCCAGCGGAAGACGACGCTGACGGTGCGCGCGCTCGAACACGGGAAG
ATGCTGTCCGTCCCCCTGCGCCTCACCGTGCTCACGCACGGGGTGAAGGCCCGCACCGCACGCAAGGGAGCACCAGCGCG
CCAGTCCCTACGCGTGTGGGTGCCCCGCGTGGACGTCAAGGGCACGCTGCACGATGCGGCGGACCTGGAGCCCTTCGTCG
AGGAGATGGTCCGCCACGAGCTCTATCTCGCGTCGCTCGACCGGCTGCACTCTCTGGCCTACGTGGGCGAGGAGCAGGTA
GAGACGCTGTCGGTGCCGGTCCGCTTCCGGGACACGCCGCGTGCCCGTGCGCTCGATGCCGCGAAGCCGCAGCGGCGCCA
GGCGCCACCACCGGGGCTCGCGGAAGCCAGCCGGTGTCTCAATGAGGAAGCACGCGCGGGTTTGCTGGAGCGCGCCTGGG
AACGGGACCTGGAGGTGTCCCGGCTCGCGGAGGCCGTCACCTCGCGCACCCGTGCCAGCGTGCTCCTGGTAGGCCCGTCG
TCCGTGGGCAAGACGGCCCTGGTTCATGAACTCGTGCAACGCGCGGAGGCGGCCACCACGGGTTCGCCGCTTCACGGGTT
GGAGGTCTTCAGCTCCTCCGGAGGCCGCATCATGGCGGGCATGCGCTACCTGGGGCAGTGGCAGGAGCGCGTGAAGCACA
TGGTGGAGGCCCTGCGTGTTCGCCAGGCCGTGCTGCACCTCGACAGCCTGTCGGAGCTGCTGTCCCTGGGTAGCGGCGAC
ACGGGGCTGGATGTGGCGCGTCAGTTGCTCCCCGCATTGGAAAGTGGCGAGGTCTCACTCGTCCTGGAGGCAACACCGGA
GGACGTGGCCCGCGCGGAGCGGACCCACGCAGCGTTCCTGCAATCGCTCCGGCACATCGCCGTGGCGCCCCTTTCGGCCC
AGGCCGCACGCAACGCGCTTCAGCAGGCCTCGCATCGGGTGGGCCGCGCTCGCAAGGTGCGCTTCACGCCCGACGCGCTG
GACCGCGCTGGCGAACTCACGGAGCGCTTCGGCTCGGGCCCTTCGCCCGGAGGCGCGGTGTCCCTGCTGCGCGCCGCCAG
CACGGAGCCCGGCGCGGCCGGAGAAGTGAACGCCGCTTCGGTGACGCGCGCCTTCTGCACTCGGACGGGGTACCCGCTCG
AACTGGTGGACTCCGCCATCCGGTTGGACCCGGATGCCCTGCTCCGCCGCTTCCGCGAGCGCGTGGTGGGCCAGGACGAG
GCCACCCTCCTCCTGCGCAATCTGGTCGTCACGCTGAAAACAGGCCTGGCGGACCCCTCGCGTCCGCTGGGCGCCTTCCT
GCTGCTGGGTCCCACCGGCGTGGGCAAGACGGAGTCGGCGCTCGCGCTGGCGGAGTACCTGTTTGGCGACGTGGCCCGGC
TGGCGCGCTTCGACATGGCGGAGTACGCCGCGCCAGGCAGCGCCACCCGGCTGGTGGGAGAAGCGGGAGGCCAACAAGGC
AGCCTGGCGCGGCGCGTCCGCGAGCAGCCCTTCGGCGTGGTGCTGCTGGACGAAATCGAGAAAGCGGACGCGGGCGTCCA
TGACCTGCTGTTGCAGGTGCTCGGCGAAGGCCGGCTCACGGATGCCACCGGCCGCACCGTCAGCTTCCGCAACACCGTGG
TGCTGCTCACCAGCAACCTGGGCGCGGACAGCGCGGGGCGCTCGCTGGGTTTCGGGGAGCGCGGCCCCCTGGAGCGGGCG
GCGCACTACCTGGGGGCCGCGGCGGCCTTCTTCCGGCCGGAGTTGCTGAACCGGTTGGACCGGGTGGTGCCCTACCGCGC
GCTCACGGAGGACGTCATTCAATCACTCGCCCGGCGCACGTTGGAGGCGGCCCTCTCTCGCGAGGGGCTCAGTCGCCGGG
GCGTGAAGGTGACCTTCGACGAGGACGTGGTGAAGCACCTGGCGCGCACCGGCTTCGACGCACGCTATGGGGCCAGGCCT
CTCAAGCGCGCCGTGGAGCAACAGGTGGTCGCGCCCCTGGCGCGGTGGTTGGCGGCTCAGGCCACCAGCGCTCCGCCCCA
GGTGGTGCTCCGCGTGGAAGCTGAGGGGCGGATTGCGTTGAGCGGCCTCGAATGA