Detailed information of component protein


Summary

Component ID T6CP001239
Component protein type TssH
T6SS ID (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (886 a.a.); Nucleotide sequence (2658 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) MXAN_RS23395
Coordinate (Strand) 6021917..6024574 (+)
NCBI ID WP_011554799.1
RefSeq NC_008095
Uniprot ID Q1D2Z9_MYXXD, A0A7Y4HE47_MYXXA
KEGG ID mxa:MXAN_4813
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4e-38 616..781
AAA_lid_9 PF17871.3 1.6e-30 371..462
ClpB_D2-small PF10431.11 4.3e-14 789..860
AAA PF00004.31 1.6e-10 232..337
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-885 MGAPIRVDPKALVRRLTPTSTRLLEAAVARASAGRFYEIVPEHMLVQMLEPEDSDVARILQQFGVDRRHLLASMERALQGLRAGSSGRPVFSETLFQWFEEAWLLASVEQGATRLRSGLLFAQFVSRRARYTAELFPELDAISRDELMSSLDVVLRPSPENVEVASADAAASGAAGGAASGAGGRGDEALKRFATSFTGRVREGKIDPIFGRHREIRQMVDILSRRRKNNPILVGEPGVGKTALVEGLAWAIVRGEVPDALKNVELLGLDLGLLQAGAGVRGEFENRLKAVISEVKASPTPIILFIDEAHTIIGAGGSQGGTDASNLLKPALARGELRTLAATTWAEYKKYFEKDAALERRFQPVKVEEPSEEDAELMLRGLRPTYEAAHGVIIRDEAVTAAVRLSSRYISGRQLPDKAVDLLDTSAARVKIELSTRPEELVQLDQEISALERERDTRKRDLAEGTGGPDEQTSLEAAEAKLSATVDARATLHARWETERTAVAALMEARKALREAAPDTDSAPLKAAVDEAAAKLAATRGEVPLVHADVDADIVARVVAGWTGVPVGKMRSDLLESVLNLEDKLRGRVRGQEAALKKVAEIIRISQAGIRNPDTPIGVMLFVGPSGVGKTETALALADALYGGERFMTTLNMSEFQEKHTVSRLIGSPPGYVGYGEGGLLTEAVRQRPYSVVLLDECEKADLEVMNLFYQVFDKGSLTDGEGRAVDFKNTVLILTSNLASDLVMRMFEDGAQPTSDEVLSVIRPALSQHFKPALLARMTVVPFGPVQRDVMRQIAEMKLAKLVSRLRTAHNVETTLAPELLDELARRCTESEMGARNMEQILQGSLMPALSRELLQHLVSGAVPPKLHVALTEGGDWDLRFAEA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9692 - -


  Protein sequence: 886 a.a.    

>T6CP001239 NC_008095:6021917-6024574 [Myxococcus xanthus DK 1622] [TssH]
MGAPIRVDPKALVRRLTPTSTRLLEAAVARASAGRFYEIVPEHMLVQMLEPEDSDVARILQQFGVDRRHLLASMERALQG
LRAGSSGRPVFSETLFQWFEEAWLLASVEQGATRLRSGLLFAQFVSRRARYTAELFPELDAISRDELMSSLDVVLRPSPE
NVEVASADAAASGAAGGAASGAGGRGDEALKRFATSFTGRVREGKIDPIFGRHREIRQMVDILSRRRKNNPILVGEPGVG
KTALVEGLAWAIVRGEVPDALKNVELLGLDLGLLQAGAGVRGEFENRLKAVISEVKASPTPIILFIDEAHTIIGAGGSQG
GTDASNLLKPALARGELRTLAATTWAEYKKYFEKDAALERRFQPVKVEEPSEEDAELMLRGLRPTYEAAHGVIIRDEAVT
AAVRLSSRYISGRQLPDKAVDLLDTSAARVKIELSTRPEELVQLDQEISALERERDTRKRDLAEGTGGPDEQTSLEAAEA
KLSATVDARATLHARWETERTAVAALMEARKALREAAPDTDSAPLKAAVDEAAAKLAATRGEVPLVHADVDADIVARVVA
GWTGVPVGKMRSDLLESVLNLEDKLRGRVRGQEAALKKVAEIIRISQAGIRNPDTPIGVMLFVGPSGVGKTETALALADA
LYGGERFMTTLNMSEFQEKHTVSRLIGSPPGYVGYGEGGLLTEAVRQRPYSVVLLDECEKADLEVMNLFYQVFDKGSLTD
GEGRAVDFKNTVLILTSNLASDLVMRMFEDGAQPTSDEVLSVIRPALSQHFKPALLARMTVVPFGPVQRDVMRQIAEMKL
AKLVSRLRTAHNVETTLAPELLDELARRCTESEMGARNMEQILQGSLMPALSRELLQHLVSGAVPPKLHVALTEGGDWDL
RFAEA*

  Nucleotide sequence: 2658 bp    

>T6CP001239 NC_008095:6021917-6024574 [Myxococcus xanthus DK 1622] [TssH]
TTGGGGGCTCCCATTCGCGTCGATCCGAAAGCGCTCGTCCGTCGCCTGACGCCCACCTCTACCCGTCTGCTCGAGGCCGC
CGTGGCCCGGGCCAGCGCGGGACGGTTCTATGAAATCGTCCCGGAGCACATGCTGGTGCAGATGCTGGAGCCGGAGGACT
CGGACGTCGCGCGCATCCTCCAGCAGTTCGGCGTGGACCGCCGCCACCTGCTGGCCAGCATGGAGCGCGCCCTCCAGGGC
CTGCGCGCGGGCAGCTCCGGCCGGCCCGTCTTCTCCGAGACGCTGTTCCAGTGGTTCGAGGAAGCGTGGCTCCTGGCTTC
CGTGGAGCAGGGCGCCACGCGGCTGCGCTCGGGCCTGCTGTTCGCCCAGTTCGTCAGCCGGCGCGCGCGCTACACCGCGG
AGCTGTTCCCCGAGCTGGACGCCATCAGCCGCGACGAGCTGATGAGCTCGCTGGACGTGGTGCTGCGGCCCTCGCCCGAG
AATGTCGAGGTCGCCTCCGCGGATGCCGCCGCCAGTGGCGCCGCGGGAGGCGCGGCCAGTGGCGCGGGCGGCCGTGGGGA
TGAAGCCCTCAAGCGCTTCGCCACGTCCTTCACCGGCCGGGTGCGCGAGGGGAAGATCGACCCCATCTTCGGCCGGCACC
GCGAAATCCGGCAGATGGTGGACATCCTCTCCCGCCGCCGGAAGAACAACCCCATCCTGGTGGGCGAGCCCGGCGTGGGC
AAGACGGCGCTGGTGGAGGGCCTGGCCTGGGCCATCGTCCGGGGCGAGGTGCCCGACGCGCTGAAGAACGTGGAGCTGCT
GGGGCTGGACCTGGGCCTGCTCCAGGCGGGCGCGGGCGTGCGCGGCGAGTTCGAGAACCGCCTCAAGGCCGTCATCTCCG
AGGTGAAGGCCTCCCCCACCCCCATCATCCTGTTCATCGACGAGGCGCACACCATCATCGGCGCGGGCGGCTCGCAGGGC
GGCACGGACGCGTCCAACCTGCTCAAGCCGGCGCTGGCGCGCGGTGAGCTGCGCACGCTCGCGGCCACCACCTGGGCCGA
GTACAAGAAGTACTTCGAGAAGGACGCCGCGCTGGAGCGGCGCTTCCAGCCGGTCAAGGTGGAGGAGCCCAGCGAGGAGG
ACGCGGAGCTGATGCTGCGCGGCCTGCGCCCCACGTACGAAGCGGCCCACGGCGTCATCATCCGCGACGAAGCCGTCACC
GCCGCGGTGCGCCTGTCCAGCCGGTACATCTCCGGCCGGCAGCTCCCGGACAAGGCGGTGGACCTGCTGGACACGTCCGC
GGCCCGCGTGAAGATTGAGCTGTCCACCCGGCCCGAGGAGCTGGTGCAACTGGACCAGGAGATTTCGGCGCTGGAGCGCG
AGCGCGACACGCGCAAGCGCGACCTCGCCGAGGGCACGGGCGGCCCGGACGAACAGACGTCCCTGGAGGCCGCCGAGGCG
AAGCTGAGCGCCACGGTGGATGCACGAGCCACGCTGCATGCGCGCTGGGAGACGGAGCGTACGGCCGTCGCGGCGCTGAT
GGAGGCCCGCAAGGCCCTGCGCGAGGCCGCTCCGGACACGGACTCCGCGCCACTGAAGGCGGCCGTGGACGAAGCTGCGG
CGAAGCTGGCGGCCACGCGCGGCGAGGTGCCGCTGGTACACGCGGACGTGGACGCGGACATCGTCGCGCGGGTGGTGGCG
GGCTGGACGGGCGTGCCCGTGGGGAAGATGCGCAGCGACCTGCTGGAGTCGGTGCTCAACCTGGAGGACAAGCTCCGGGG
CCGGGTGCGGGGCCAGGAGGCGGCGCTGAAGAAGGTTGCGGAAATCATCCGCATCTCCCAGGCCGGCATCCGCAACCCGG
ACACGCCCATTGGCGTGATGCTCTTCGTGGGCCCCAGCGGCGTGGGCAAGACGGAGACGGCGCTGGCGCTGGCGGACGCG
CTCTATGGCGGCGAGCGCTTCATGACGACGCTCAACATGAGCGAGTTCCAGGAGAAGCACACGGTGAGCCGGCTCATCGG
CTCGCCGCCGGGCTACGTGGGATACGGCGAGGGCGGCCTGCTGACGGAAGCCGTGCGTCAGCGGCCCTACTCCGTCGTGC
TGCTGGACGAGTGCGAGAAGGCCGACCTGGAGGTGATGAACCTCTTCTACCAGGTGTTCGACAAGGGCTCGCTGACGGAC
GGCGAGGGCCGCGCGGTGGACTTCAAGAACACCGTGCTCATCCTCACCAGCAACCTGGCCTCGGACCTGGTGATGCGGAT
GTTCGAGGACGGCGCGCAGCCCACCTCCGATGAGGTGCTGTCGGTGATTCGCCCCGCGCTCAGCCAGCACTTCAAGCCGG
CGCTGCTGGCTCGAATGACGGTCGTCCCCTTCGGGCCGGTGCAGCGCGACGTGATGCGCCAGATTGCCGAGATGAAGCTG
GCCAAGCTGGTGAGCCGGCTGCGCACGGCGCACAACGTGGAGACGACGCTGGCGCCAGAGTTGCTGGACGAGCTTGCGCG
CCGCTGCACGGAGTCGGAGATGGGGGCGCGCAACATGGAGCAGATTCTCCAGGGCTCGCTGATGCCGGCGCTGTCCCGCG
AGTTGCTGCAGCACCTGGTGAGCGGCGCGGTGCCCCCGAAGCTGCATGTGGCCCTGACCGAGGGAGGCGACTGGGACCTC
CGGTTCGCCGAGGCCTGA