SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP001238
Component protein type	TssG
T6SS ID (Type)	T6SS00127 (Type i1)
Strain	Myxococcus xanthus DK 1622
Replicon	chromosome
Sequence	Protein sequence (348 a.a.); Nucleotide sequence (1044 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603 [2] Konovalova A, Petters T, Søgaard-Andersen L. Extracellular biology of Myxococcus xanthus. FEMS Microbiol Rev. 2010 Mar;34(2):89-106. doi: 10.1111/j.1574-6976.2009.00194.x. Epub 2009 Oct 20. PMID: 19895646 [3] Chang YW, Chen S, Tocheva EI, et al. Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography. Nat Methods. 2014 Jul;11(7):737-9. doi: 10.1038/nmeth.2961. Epub 2014 May 11. PMID: 24813625

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	MXAN_RS23390
Coordinate (Strand)	6020790..6021833 (+)
NCBI ID	WP_020478477.1
RefSeq	NC_008095
Uniprot ID	UPI0002FF4EFA
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	1.2e-75	23..334

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-347	VASEERLPDAFVETAQKLAELAPRVGFFPLVAFLERLTSQATRVGGAGPVNEEMIRFRHDPSLGFPSGDVSSVTLHQVPVRAEDPYSKRPLFEVVTRFLGLTGAVSPLPHYLAEEVAQEDPDHPVRREFLDLFHHRLLSLLYRIESKYRVTSETDTSFSDQWSRRLLALGGFDTYEKALEGTLPTWRLLRIAPLLASRARTSEQLEVALEDVLGDDLEGARVSVRQFVGRWVDIDARARLGHSNHQLGRNMLLGGKAFDRTGKIQIHIRPLPPRAYKRLMQEGDLLPLVREVVALFVRDPLEYDLELGLTEGVQHQFRLSSREPSQLGRDTWLGLSQQTQMSVPVVK

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9353	-	-

Protein sequence: 348 a.a.

						>T6CP001238 NC_008095:6020790-6021833 [Myxococcus xanthus DK 1622] [TssG]
VASEERLPDAFVETAQKLAELAPRVGFFPLVAFLERLTSQATRVGGAGPVNEEMIRFRHDPSLGFPSGDVSSVTLHQVPV
RAEDPYSKRPLFEVVTRFLGLTGAVSPLPHYLAEEVAQEDPDHPVRREFLDLFHHRLLSLLYRIESKYRVTSETDTSFSD
QWSRRLLALGGFDTYEKALEGTLPTWRLLRIAPLLASRARTSEQLEVALEDVLGDDLEGARVSVRQFVGRWVDIDARARL
GHSNHQLGRNMLLGGKAFDRTGKIQIHIRPLPPRAYKRLMQEGDLLPLVREVVALFVRDPLEYDLELGLTEGVQHQFRLS
SREPSQLGRDTWLGLSQQTQMSVPVVK*					

Nucleotide sequence: 1044 bp

						>T6CP001238 NC_008095:6020790-6021833 [Myxococcus xanthus DK 1622] [TssG]
GTGGCTTCCGAGGAACGGCTCCCAGACGCTTTTGTAGAGACGGCCCAGAAGCTGGCCGAGCTGGCGCCCCGGGTGGGCTT
CTTTCCCCTGGTGGCGTTCTTGGAGCGGCTGACGTCGCAGGCCACGCGCGTGGGCGGCGCGGGGCCCGTCAACGAGGAGA
TGATTCGCTTCCGGCACGACCCGTCCCTGGGGTTCCCCTCGGGCGACGTGTCGTCCGTGACGCTCCACCAGGTGCCGGTG
CGGGCGGAGGACCCGTATTCGAAGCGGCCGCTCTTCGAGGTGGTGACACGCTTCCTGGGCCTGACGGGCGCGGTGAGTCC
CCTGCCCCACTACCTGGCCGAGGAGGTCGCGCAGGAGGACCCGGACCACCCGGTGCGGCGCGAGTTCCTGGACCTGTTCC
ACCACCGGCTGCTGTCGCTGCTGTACCGCATCGAGTCGAAGTACCGCGTCACGAGCGAGACGGACACATCCTTCTCGGAC
CAGTGGTCCCGGCGCCTGCTGGCGCTGGGCGGGTTCGACACCTACGAGAAGGCCCTGGAGGGTACGCTGCCGACCTGGCG
CCTGCTGCGGATTGCCCCGCTGCTGGCCAGCCGGGCGAGGACGTCCGAGCAGTTGGAGGTCGCGCTCGAGGACGTGCTGG
GCGACGACCTGGAGGGCGCGCGGGTGTCGGTGCGCCAGTTCGTGGGCCGCTGGGTGGACATCGACGCCCGGGCGCGGCTG
GGCCACTCCAACCACCAACTGGGGCGCAACATGCTGCTGGGCGGCAAGGCCTTCGACCGGACGGGGAAGATTCAAATCCA
CATCCGGCCGCTGCCGCCGCGCGCCTACAAGCGGCTGATGCAGGAAGGGGACTTGCTGCCACTGGTGAGAGAAGTGGTAG
CCCTCTTCGTGAGGGACCCCCTGGAGTACGATTTGGAGCTGGGGCTCACCGAAGGCGTGCAGCACCAGTTCCGGCTCTCC
AGCCGGGAGCCGAGTCAGCTCGGGCGGGACACGTGGCTGGGCCTGAGTCAGCAGACGCAGATGAGTGTCCCCGTGGTGAA
ATGA					