Detailed information of component protein


Summary

Component ID T6CP001236
Component protein type TssC
T6SS ID (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (495 a.a.); Nucleotide sequence (1485 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) MXAN_RS23370
Coordinate (Strand) 6016463..6017947 (+)
NCBI ID WP_011554794.1
RefSeq NC_008095
Uniprot ID Q1D304_MYXXD, A0A4Y6CD30_MYXXA, A0A511HEY0_9DELT
KEGG ID mxa:MXAN_4808
PDB ID 5URX, 5URW
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.5e-123 68..367
VipB_2 PF18945.2 4.2e-45 381..491
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-494 MANETQTQKSTGVANDASLSLLDEILSEAKLKPKDEGYDVAKRGVQAFITEMLAPNRSEERVDKALVDAMIAEIDKRLSSQVNEILHAKEFQKLESSWRSLKFMVDRTDFRENTRVEMLNASKEDLQKDFEDAPEVTKSGLYKLVYSNEYGVFGGKPYGIISANYDFNVGPQDMELLRKCASVAAMAHAPFIGNAAPEVFGEESFLKLPDLKDLKSLFEGPQYARWHSFRESEDARYVGLALPRFLLRLPYGEKTVPVKAFNFTEDVVGHHERYLWGHASVALTSRVADSFAKFRWSPNIIGPQSGGAVENLPLHQYEAMGEIQTKIPTEVMLTERREFELSEEGFIGLVFRKDSDNAAFFSANSTQKPRFFGNTPEGKAAETNYRLGTQLPYMFIMTRLAHYIKVLQREQIGSWKEKSDLERELNHWLSQYISDMDDPAPAVRSRRPLRAARVVVEDVEGQPGWYRCSLQVRPHFKYMGASFTLSLVGKLDKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9966 - -


  Protein sequence: 495 a.a.    

>T6CP001236 NC_008095:6016463-6017947 [Myxococcus xanthus DK 1622] [TssC]
MANETQTQKSTGVANDASLSLLDEILSEAKLKPKDEGYDVAKRGVQAFITEMLAPNRSEERVDKALVDAMIAEIDKRLSS
QVNEILHAKEFQKLESSWRSLKFMVDRTDFRENTRVEMLNASKEDLQKDFEDAPEVTKSGLYKLVYSNEYGVFGGKPYGI
ISANYDFNVGPQDMELLRKCASVAAMAHAPFIGNAAPEVFGEESFLKLPDLKDLKSLFEGPQYARWHSFRESEDARYVGL
ALPRFLLRLPYGEKTVPVKAFNFTEDVVGHHERYLWGHASVALTSRVADSFAKFRWSPNIIGPQSGGAVENLPLHQYEAM
GEIQTKIPTEVMLTERREFELSEEGFIGLVFRKDSDNAAFFSANSTQKPRFFGNTPEGKAAETNYRLGTQLPYMFIMTRL
AHYIKVLQREQIGSWKEKSDLERELNHWLSQYISDMDDPAPAVRSRRPLRAARVVVEDVEGQPGWYRCSLQVRPHFKYMG
ASFTLSLVGKLDKE*

  Nucleotide sequence: 1485 bp    

>T6CP001236 NC_008095:6016463-6017947 [Myxococcus xanthus DK 1622] [TssC]
ATGGCCAACGAGACCCAGACCCAGAAGTCCACGGGCGTCGCCAATGACGCCTCGCTGTCCCTGCTCGACGAAATCCTGTC
CGAGGCCAAGCTGAAGCCGAAGGACGAGGGTTACGACGTCGCCAAGCGCGGCGTGCAGGCCTTCATCACCGAGATGCTGG
CGCCCAACCGCTCCGAGGAGCGCGTGGACAAGGCGCTCGTCGACGCGATGATTGCCGAAATCGACAAGCGCCTGTCCTCC
CAGGTCAACGAAATCCTCCACGCGAAGGAGTTCCAGAAGCTGGAGTCCTCGTGGCGCTCGCTGAAGTTCATGGTGGACCG
CACCGACTTCCGCGAGAACACCCGCGTGGAGATGCTGAACGCCTCCAAGGAAGACCTGCAGAAGGACTTCGAGGACGCGC
CCGAGGTCACCAAGAGCGGCCTGTACAAGCTCGTGTACTCCAACGAGTACGGCGTCTTCGGTGGCAAGCCCTACGGCATC
ATCTCCGCCAACTACGACTTCAACGTGGGCCCGCAGGACATGGAGCTGCTCCGCAAGTGCGCCTCCGTGGCCGCCATGGC
GCACGCGCCCTTCATCGGCAATGCCGCGCCGGAAGTGTTCGGCGAGGAGAGCTTCCTCAAGCTGCCCGACCTGAAGGACC
TCAAGTCGCTCTTCGAGGGTCCGCAGTACGCCCGGTGGCACTCGTTCCGTGAGAGCGAGGACGCGCGCTACGTGGGCCTG
GCGCTGCCGCGCTTCCTGCTGCGCCTGCCCTACGGTGAGAAGACGGTGCCGGTGAAGGCCTTCAACTTCACCGAAGACGT
CGTGGGCCACCACGAGCGCTACCTGTGGGGTCACGCCTCCGTGGCGCTCACCAGCCGCGTGGCGGACTCGTTCGCCAAGT
TCCGCTGGAGCCCGAACATCATCGGTCCCCAGTCCGGCGGCGCGGTGGAGAACCTGCCGCTGCACCAGTACGAGGCCATG
GGGGAGATCCAGACCAAGATTCCCACCGAGGTCATGCTCACCGAGCGGCGCGAGTTCGAGCTCTCCGAGGAGGGCTTCAT
CGGCCTGGTGTTCCGCAAGGACTCCGACAACGCGGCCTTCTTCAGCGCCAACTCCACGCAGAAGCCCCGGTTCTTCGGCA
ACACCCCGGAGGGCAAGGCGGCGGAGACCAACTATCGCCTGGGCACGCAGCTCCCTTACATGTTCATCATGACCCGCCTG
GCGCACTACATCAAAGTGCTCCAGCGCGAGCAGATTGGTAGCTGGAAGGAGAAGTCGGACCTGGAGCGCGAGCTCAATCA
CTGGCTCAGCCAGTACATCTCCGACATGGACGACCCTGCTCCCGCCGTGCGCTCGCGCCGCCCCCTGCGCGCCGCGCGCG
TGGTGGTGGAGGACGTGGAGGGTCAGCCGGGCTGGTACCGCTGCAGCCTGCAGGTGCGCCCCCACTTCAAGTACATGGGT
GCATCGTTCACCTTGTCCCTCGTGGGCAAGCTGGACAAGGAGTAG