Detailed information of component protein


Summary

Component ID T6CP001234
Component protein type TssM
T6SS ID (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (1232 a.a.); Nucleotide sequence (3696 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) MXAN_RS23350
Coordinate (Strand) 6009191..6012886 (+)
NCBI ID WP_011554790.1
RefSeq NC_008095
Uniprot ID Q1D308_MYXXD, A0A7Y4M7X7_MYXXA
KEGG ID mxa:MXAN_4804
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 3.5e-80 175..432
IcmF-related PF06761.14 3.6e-40 479..803
IcmF_C PF06744.14 4.6e-22 1078..1180
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-1 V
Transmembrane helix 2-24 MAYLLPLLGIGAPMFALMTYLGL
Outside 25-27 TMQ
Transmembrane helix 28-47 QAAIVAALAGLLAAGVVWLV
Inside 48-426 KRIRARAAAKKLEGALAAQADEQATTVRPDLQPEIKAMQSEFTKAVEALKASKLARGGKDALAVLPWYLIVGPPGAGKSTALRNSGLKFPYLSARGGVRGVGGTRNCDWWLTNEAVLLDTAGRYTSAEEDRPEWLAFLDTVAKHRPSRPINGLIVAISVSELLNADPQAVGEMGQTIRERLDEITTRLKMLVPVYVMITKCDLLPGFVEMFSDLSRVERGQIWGFTVPLEQQREASTDLFRERFDQMLSVLEQRSLRRLGQERRLETREKIYGFPQKFDALRKNLAEFLQPLFLENVFQDTPVFRGLYFNSGTQELRPVDKVSPSAAEIFGSTNGRAQTDGATDGRSYFLWDVFTKVMFQDQQVAVRSSLEEARVRRQR
Transmembrane helix 427-449 MMLASAASAATVLLLSLPTVSFF
Outside 450-1231 KNRNMAEAVTEAITSVNLDPRDDIRRVEDLIPLRNRLQELTEYEEGSAPVFMRFGLYQGQKLLPQARQFYNAALRRVLLGKQFELIQQRLDTFGKNPDLLTVRSDEDYSKHFDAYRQYFDDLKMYLLVTTPRDPREPELDELQRKWLQDEIVKHWKRVRGDAVDERAVANHAETFLLMLANEQMLPEERKPAREQRIAFGRVTGVVQSARRSLNNVPLVRLELAQLVANMSGAYPDVTLEQLVGSVPQMSATSRVRGAFTRKAYDDVIRERLDLAFQDQQSWVLDRDEKVDTVSSRRELRTRYFEAYTQEWKDFLGAIRVQAPENLTQMESLLTNLTRGKPKPYGRLFRALTYNVVLDKRDAKAAEADTGFLAKAGKLFGSEPGKDVPQKRELLNANSPSGAQEVTARDLEREFASLIRFATETSKTEDGEESLTALDSYEDQLATVQTTLLAVKDKPAESGLLLDKIESTRNNVEMMVRKQTDNVAIFERLLLPPFQEMRSVVFVGVACNKSKLWQDQVVMAWSSAFKGKYPFDRASQADAPLPEVAEFLRPEGGLVRKFVKEQLLEDVVATGRRWEFTSSGGVMYRPDLLGFLEKTGALSTTLFPGGDTVDPLVRFQVRLRPGVSADGMASQISSITLTLDGTDETYRNGPDTVWKPMIWPGQAGKLGARITVQSADGSTETTLEAEGDWGLFRLLERVKRIEPSADGRYFTATWEIEEMNGALVSIDFRPERTANPFFGMSGNTSKLLAIFRDPGLQPPTTIARKGECAPQAIAADRVH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9721 - -


  Protein sequence: 1232 a.a.    

>T6CP001234 NC_008095:6009191-6012886 [Myxococcus xanthus DK 1622] [TssM]
VMAYLLPLLGIGAPMFALMTYLGLTMQQAAIVAALAGLLAAGVVWLVKRIRARAAAKKLEGALAAQADEQATTVRPDLQP
EIKAMQSEFTKAVEALKASKLARGGKDALAVLPWYLIVGPPGAGKSTALRNSGLKFPYLSARGGVRGVGGTRNCDWWLTN
EAVLLDTAGRYTSAEEDRPEWLAFLDTVAKHRPSRPINGLIVAISVSELLNADPQAVGEMGQTIRERLDEITTRLKMLVP
VYVMITKCDLLPGFVEMFSDLSRVERGQIWGFTVPLEQQREASTDLFRERFDQMLSVLEQRSLRRLGQERRLETREKIYG
FPQKFDALRKNLAEFLQPLFLENVFQDTPVFRGLYFNSGTQELRPVDKVSPSAAEIFGSTNGRAQTDGATDGRSYFLWDV
FTKVMFQDQQVAVRSSLEEARVRRQRMMLASAASAATVLLLSLPTVSFFKNRNMAEAVTEAITSVNLDPRDDIRRVEDLI
PLRNRLQELTEYEEGSAPVFMRFGLYQGQKLLPQARQFYNAALRRVLLGKQFELIQQRLDTFGKNPDLLTVRSDEDYSKH
FDAYRQYFDDLKMYLLVTTPRDPREPELDELQRKWLQDEIVKHWKRVRGDAVDERAVANHAETFLLMLANEQMLPEERKP
AREQRIAFGRVTGVVQSARRSLNNVPLVRLELAQLVANMSGAYPDVTLEQLVGSVPQMSATSRVRGAFTRKAYDDVIRER
LDLAFQDQQSWVLDRDEKVDTVSSRRELRTRYFEAYTQEWKDFLGAIRVQAPENLTQMESLLTNLTRGKPKPYGRLFRAL
TYNVVLDKRDAKAAEADTGFLAKAGKLFGSEPGKDVPQKRELLNANSPSGAQEVTARDLEREFASLIRFATETSKTEDGE
ESLTALDSYEDQLATVQTTLLAVKDKPAESGLLLDKIESTRNNVEMMVRKQTDNVAIFERLLLPPFQEMRSVVFVGVACN
KSKLWQDQVVMAWSSAFKGKYPFDRASQADAPLPEVAEFLRPEGGLVRKFVKEQLLEDVVATGRRWEFTSSGGVMYRPDL
LGFLEKTGALSTTLFPGGDTVDPLVRFQVRLRPGVSADGMASQISSITLTLDGTDETYRNGPDTVWKPMIWPGQAGKLGA
RITVQSADGSTETTLEAEGDWGLFRLLERVKRIEPSADGRYFTATWEIEEMNGALVSIDFRPERTANPFFGMSGNTSKLL
AIFRDPGLQPPTTIARKGECAPQAIAADRVH*

  Nucleotide sequence: 3696 bp    

>T6CP001234 NC_008095:6009191-6012886 [Myxococcus xanthus DK 1622] [TssM]
GTGATGGCGTACCTGTTACCGCTGTTGGGCATCGGCGCGCCGATGTTCGCCCTGATGACCTACCTGGGCCTCACCATGCA
GCAGGCGGCCATCGTCGCCGCGCTCGCGGGCCTGCTGGCCGCCGGCGTGGTGTGGCTGGTCAAGCGCATCCGCGCGCGCG
CCGCCGCCAAGAAGCTGGAGGGCGCGCTGGCGGCCCAGGCGGATGAGCAGGCCACCACCGTGCGGCCGGACCTGCAGCCT
GAAATCAAGGCCATGCAGTCGGAGTTCACCAAGGCGGTGGAGGCGCTCAAGGCCTCCAAGCTGGCGCGCGGTGGCAAGGA
CGCGCTGGCGGTGCTGCCCTGGTACCTCATCGTCGGTCCACCGGGCGCCGGCAAGAGCACCGCGCTGCGCAACTCCGGGC
TGAAGTTCCCGTATCTCTCCGCGCGCGGCGGCGTGCGCGGCGTGGGCGGCACGCGCAACTGTGACTGGTGGCTGACCAAC
GAGGCCGTGCTGCTGGACACAGCCGGCCGCTACACCAGCGCGGAAGAGGACCGGCCGGAGTGGCTGGCCTTCCTGGACAC
GGTGGCGAAGCACCGCCCCAGCCGTCCCATCAACGGCCTCATCGTGGCCATCAGCGTCAGCGAGCTGCTGAACGCGGACC
CGCAGGCCGTGGGGGAGATGGGGCAGACCATCCGCGAGCGCCTGGATGAAATCACGACCCGGCTGAAGATGCTGGTGCCG
GTGTACGTGATGATCACCAAGTGCGACCTGCTGCCCGGCTTCGTGGAGATGTTCTCCGACCTGTCGCGCGTGGAGCGCGG
GCAGATCTGGGGCTTCACCGTGCCGCTGGAGCAGCAGCGCGAGGCGAGCACGGACCTGTTCCGCGAGCGCTTCGACCAGA
TGCTCTCCGTGCTGGAGCAGCGCTCGCTGCGCCGGCTGGGCCAGGAGCGCCGGCTGGAGACGCGCGAGAAGATCTACGGC
TTCCCGCAGAAGTTCGACGCGCTCCGGAAGAACCTGGCGGAGTTCCTCCAGCCGCTCTTCCTGGAGAACGTGTTCCAGGA
CACGCCCGTCTTCCGCGGCCTCTACTTCAACAGCGGCACGCAGGAGCTGCGCCCGGTGGACAAGGTGTCCCCGTCCGCGG
CGGAGATCTTCGGCAGCACCAACGGCCGGGCGCAGACGGATGGCGCCACGGACGGCCGCAGCTACTTCCTCTGGGACGTC
TTCACCAAGGTGATGTTCCAGGACCAGCAGGTGGCCGTGCGCAGCTCGCTGGAGGAAGCGAGGGTGCGCCGCCAGCGGAT
GATGTTGGCCAGCGCGGCCTCCGCCGCCACGGTGCTGCTGCTGTCGCTACCCACGGTGTCCTTCTTCAAGAACCGCAACA
TGGCGGAGGCCGTCACCGAGGCCATCACCAGTGTGAATCTGGACCCGCGTGACGACATCCGCCGCGTCGAGGACCTGATT
CCGCTGCGCAACCGGCTCCAGGAGCTGACGGAGTACGAGGAAGGCAGCGCCCCGGTGTTCATGCGCTTCGGCCTCTACCA
GGGCCAGAAGCTGCTGCCGCAGGCGCGGCAGTTCTACAACGCGGCGCTGCGCAGGGTGCTGCTCGGCAAGCAGTTCGAGC
TCATCCAGCAGCGCCTGGACACGTTCGGGAAGAACCCGGACCTGCTGACGGTGCGCAGCGACGAGGACTACAGCAAGCAC
TTCGACGCGTACCGCCAGTACTTCGACGACTTGAAGATGTACCTGCTGGTGACCACGCCCCGCGACCCGCGCGAGCCGGA
GCTGGACGAACTGCAGCGCAAGTGGCTCCAGGACGAAATCGTCAAGCACTGGAAGCGCGTGCGGGGCGACGCGGTGGACG
AGCGGGCCGTGGCGAACCACGCGGAGACGTTCCTGCTGATGCTCGCCAACGAGCAGATGCTCCCCGAGGAGCGGAAGCCG
GCGCGCGAGCAGCGCATCGCCTTCGGCCGCGTCACCGGCGTGGTGCAGTCGGCGCGCCGCTCGCTCAACAACGTGCCCCT
GGTGCGGTTGGAGCTGGCGCAGTTGGTGGCCAACATGAGCGGCGCGTACCCGGACGTGACGCTGGAGCAGCTCGTGGGCT
CGGTGCCGCAGATGAGCGCCACCTCGCGCGTGCGGGGCGCCTTCACGCGCAAGGCCTACGACGACGTCATCCGCGAGCGG
CTGGACCTGGCCTTCCAGGACCAGCAGTCGTGGGTGCTGGACCGCGATGAGAAGGTGGACACGGTGAGCTCGCGGCGCGA
GCTGCGCACCCGCTACTTCGAGGCCTACACCCAGGAGTGGAAGGACTTCCTCGGCGCCATCCGTGTGCAGGCACCGGAGA
ACCTGACGCAGATGGAGAGCCTGCTGACGAACCTGACGCGTGGCAAGCCCAAGCCCTACGGGCGGCTGTTCCGCGCGCTC
ACGTACAACGTGGTGCTCGACAAGCGCGACGCCAAGGCGGCGGAGGCCGACACGGGCTTCCTGGCCAAGGCGGGGAAGCT
GTTCGGCTCGGAGCCCGGGAAGGACGTGCCGCAGAAGCGCGAGCTGCTGAACGCCAACTCACCTTCCGGCGCCCAGGAAG
TCACGGCCCGTGACCTGGAGCGCGAGTTCGCCTCGCTCATCCGCTTCGCCACGGAGACCTCCAAGACGGAGGACGGTGAG
GAGTCCCTGACGGCGCTGGATTCGTATGAAGACCAGCTGGCCACCGTCCAGACGACGCTGCTGGCGGTGAAGGACAAGCC
GGCCGAGTCCGGCCTGCTGTTGGACAAGATTGAGTCCACCCGCAACAACGTGGAGATGATGGTCCGCAAGCAGACGGACA
ACGTCGCCATCTTCGAGCGGCTGCTGCTGCCGCCGTTCCAGGAGATGCGCTCGGTGGTGTTCGTGGGCGTGGCCTGCAAC
AAGAGCAAGCTGTGGCAGGACCAGGTGGTGATGGCGTGGAGCAGCGCCTTCAAGGGCAAGTACCCGTTTGACCGCGCGTC
GCAGGCAGACGCGCCGCTGCCCGAGGTCGCGGAGTTCCTGCGCCCCGAAGGCGGCCTGGTGCGCAAGTTCGTCAAGGAGC
AGCTCCTGGAGGACGTGGTGGCCACCGGACGCCGGTGGGAGTTCACCTCGTCAGGCGGGGTCATGTACCGGCCTGACCTG
CTCGGCTTCCTGGAGAAGACGGGCGCGCTCTCCACCACGCTCTTCCCCGGCGGCGACACGGTGGACCCGCTGGTCCGCTT
CCAGGTGCGCCTGCGCCCGGGCGTCTCCGCGGACGGCATGGCTTCGCAGATTTCATCCATCACCCTGACGCTCGACGGGA
CGGACGAGACGTACCGCAACGGCCCGGACACGGTGTGGAAGCCGATGATCTGGCCCGGTCAGGCAGGCAAGCTCGGCGCC
CGCATCACCGTGCAGAGCGCGGATGGCTCCACGGAGACGACGCTGGAGGCCGAGGGTGACTGGGGCCTGTTCCGCCTGCT
GGAGCGCGTCAAGCGCATCGAGCCCAGCGCGGACGGCCGCTACTTCACCGCGACGTGGGAAATCGAGGAGATGAACGGCG
CGCTGGTCTCCATCGACTTCCGTCCGGAGCGCACCGCCAACCCGTTCTTCGGGATGTCGGGCAACACGTCCAAGCTGCTG
GCCATCTTCCGGGACCCGGGGTTGCAGCCGCCGACGACCATCGCTCGCAAAGGCGAGTGCGCGCCGCAGGCCATCGCGGC
GGATAGGGTTCATTGA