Detailed information of component protein


Summary

Component ID T6CP001232
Component protein type TssK
T6SS ID (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (456 a.a.); Nucleotide sequence (1368 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) MXAN_RS23340
Coordinate (Strand) 6007095..6008462 (+)
NCBI ID WP_011554788.1
RefSeq NC_008095
Uniprot ID Q1D310_MYXXD, A0A7Y4M719_MYXXA
KEGG ID mxa:MXAN_4802
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 8.7e-112 19..440
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-455 MKSVQRVVWSEGMFMSPHHLQQQDLYHEQLLDQRLASLEPYPWGVVALEFDMEALRAGQVQLTHFTGILPDGLPVSFESGDAEAPPARPADGYFPPAQRTLDVYLGVPRERSGVESFGSGERLGSSPRYTPASRPVSDLTASTSISQVAFGQRNVRLLFGTEPRDDFESIKLCELSRDRSGNLMLVESFIPPCLRIDASPFVMNELRTMLRLMVSKQRQLSSRRRHRDASALEFTAGDVTLFLELNALNGTIPFIQHALDAGNLRPRDLYLALAQCAGQLCTFSVSADPSTLPTFQFTNLRATFEELFRRLSELMRAVALEQCLSVDLTAGADGMFRGRLEDDRLERCGHFILAVRSELPERVVAEQLPKLSKVAAWEDIRALVQAAAPGVPLAVTYRPPPEVPVQPGTVYFSLSMNDGYWRNVMRDRNLAIYLPQPFDANRTTVELLAVPTANR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 456 a.a.    

>T6CP001232 NC_008095:6007095-6008462 [Myxococcus xanthus DK 1622] [TssK]
MKSVQRVVWSEGMFMSPHHLQQQDLYHEQLLDQRLASLEPYPWGVVALEFDMEALRAGQVQLTHFTGILPDGLPVSFESG
DAEAPPARPADGYFPPAQRTLDVYLGVPRERSGVESFGSGERLGSSPRYTPASRPVSDLTASTSISQVAFGQRNVRLLFG
TEPRDDFESIKLCELSRDRSGNLMLVESFIPPCLRIDASPFVMNELRTMLRLMVSKQRQLSSRRRHRDASALEFTAGDVT
LFLELNALNGTIPFIQHALDAGNLRPRDLYLALAQCAGQLCTFSVSADPSTLPTFQFTNLRATFEELFRRLSELMRAVAL
EQCLSVDLTAGADGMFRGRLEDDRLERCGHFILAVRSELPERVVAEQLPKLSKVAAWEDIRALVQAAAPGVPLAVTYRPP
PEVPVQPGTVYFSLSMNDGYWRNVMRDRNLAIYLPQPFDANRTTVELLAVPTANR*

  Nucleotide sequence: 1368 bp    

>T6CP001232 NC_008095:6007095-6008462 [Myxococcus xanthus DK 1622] [TssK]
ATGAAGTCCGTGCAGCGAGTCGTCTGGTCGGAGGGCATGTTCATGAGCCCCCACCACCTCCAGCAGCAGGACCTCTACCA
CGAGCAACTGCTGGATCAGCGGCTGGCCTCGCTCGAACCGTATCCCTGGGGCGTCGTGGCCCTGGAGTTCGACATGGAGG
CGCTGCGCGCCGGCCAGGTGCAGCTGACCCACTTCACCGGCATCCTCCCCGACGGGCTGCCGGTCTCCTTCGAGTCCGGA
GACGCGGAGGCGCCGCCCGCTCGGCCCGCGGATGGCTACTTCCCGCCCGCCCAGCGCACCCTGGACGTGTACCTGGGCGT
GCCGCGCGAACGCAGCGGCGTGGAGAGCTTCGGCAGCGGGGAGCGGCTGGGCAGCAGCCCGCGCTACACCCCCGCCTCCC
GCCCCGTCAGTGATTTGACGGCCTCCACCTCCATCTCGCAGGTGGCCTTCGGTCAGCGCAACGTGCGCCTGCTGTTCGGC
ACCGAGCCGCGCGACGACTTCGAGTCCATCAAGCTGTGCGAGCTGTCCCGCGACCGCTCCGGCAACCTGATGCTGGTGGA
GTCCTTCATCCCGCCGTGCCTGCGCATCGACGCGTCCCCGTTCGTCATGAACGAGCTGCGGACGATGTTGCGGCTGATGG
TGTCCAAGCAGCGGCAGTTGTCCTCGCGGCGGCGGCACCGGGACGCCTCGGCGCTGGAGTTCACCGCGGGCGACGTGACG
CTCTTCCTGGAGCTCAACGCGCTCAACGGCACCATCCCCTTCATCCAGCACGCGCTGGACGCGGGCAACCTGCGGCCCAG
GGACTTGTACCTGGCGCTGGCGCAGTGCGCGGGGCAATTGTGCACCTTCTCCGTCAGCGCGGACCCGTCCACGCTGCCCA
CCTTCCAGTTCACCAACCTGCGCGCCACCTTCGAGGAGCTGTTCCGCCGCCTCTCCGAGCTGATGCGCGCGGTGGCGCTG
GAGCAGTGCCTGTCGGTGGACCTGACGGCGGGCGCAGACGGCATGTTCCGCGGCCGGCTGGAGGACGACCGGCTGGAGCG
CTGCGGCCACTTCATCCTCGCGGTGCGCAGCGAGCTGCCGGAGCGGGTGGTGGCCGAGCAGCTCCCCAAGCTGTCGAAGG
TGGCCGCCTGGGAGGACATCCGCGCGCTGGTGCAGGCCGCCGCGCCCGGCGTGCCGCTGGCGGTGACGTACCGGCCACCG
CCCGAAGTCCCCGTGCAGCCAGGCACCGTCTACTTCAGCCTCTCCATGAATGACGGCTACTGGAGGAACGTGATGCGGGA
CCGCAACCTCGCCATCTACCTCCCGCAGCCGTTCGACGCGAACCGAACGACCGTGGAACTGCTCGCGGTTCCCACCGCCA
ATCGCTGA