Detailed information of component protein


Summary

Component ID T6CP001231
Component protein type TssJ
T6SS ID (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (206 a.a.); Nucleotide sequence (618 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) MXAN_RS23335
Coordinate (Strand) 6006481..6007098 (+)
NCBI ID WP_011554787.1
RefSeq NC_008095
Uniprot ID Q1D311_MYXXD, A0A7Y4HFW5_MYXXA
KEGG ID mxa:MXAN_4801
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1.1e-22 41..144

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-205 VWSAGRNLRWGVVIALAAALSGSAGCVKRVPQACETPPPFQVVVDASEQLNPDARGRSLPTVVQIVQLKDSVRLERAGFKDLWGKPEEFLKEDLLQVAELVIPPGRQVKRWVQRDPKARFVLAMGHFRQPLGYSWRTVAALPVVEEARCVERPAGDQGDPKPGDEVFRYRLQGYQIDLMFRPMTQAPEPRLQPQAGDGVSPRRGV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9770 pos: 25-26. SAG-CV. VWSAGRNLRWGVVIALAAALSGSAG



  Protein sequence: 206 a.a.    

>T6CP001231 NC_008095:6006481-6007098 [Myxococcus xanthus DK 1622] [TssJ]
VWSAGRNLRWGVVIALAAALSGSAGCVKRVPQACETPPPFQVVVDASEQLNPDARGRSLPTVVQIVQLKDSVRLERAGFK
DLWGKPEEFLKEDLLQVAELVIPPGRQVKRWVQRDPKARFVLAMGHFRQPLGYSWRTVAALPVVEEARCVERPAGDQGDP
KPGDEVFRYRLQGYQIDLMFRPMTQAPEPRLQPQAGDGVSPRRGV*

  Nucleotide sequence: 618 bp    

>T6CP001231 NC_008095:6006481-6007098 [Myxococcus xanthus DK 1622] [TssJ]
GTGTGGAGTGCCGGCCGGAACCTCCGGTGGGGTGTGGTCATCGCGCTCGCGGCCGCCTTGAGCGGGAGCGCGGGCTGCGT
GAAGCGTGTGCCCCAGGCGTGTGAGACGCCGCCGCCGTTCCAGGTGGTGGTGGATGCGTCGGAGCAGCTCAATCCCGACG
CGCGCGGGCGCTCGCTGCCCACCGTGGTGCAGATCGTCCAGCTCAAGGACAGCGTCCGGCTGGAGCGCGCGGGCTTCAAG
GACCTGTGGGGCAAGCCGGAGGAGTTCCTCAAGGAGGACCTGCTCCAGGTGGCCGAGCTGGTGATTCCGCCCGGCCGCCA
GGTGAAGCGCTGGGTGCAGCGTGATCCGAAGGCCCGCTTCGTCCTGGCCATGGGGCACTTCCGGCAGCCGCTGGGCTATT
CGTGGCGAACGGTGGCGGCGCTCCCCGTGGTGGAGGAAGCGCGCTGCGTGGAGCGCCCCGCGGGTGACCAGGGCGACCCG
AAGCCGGGGGACGAGGTCTTCCGCTACCGGCTGCAAGGCTATCAGATTGACCTGATGTTCCGGCCCATGACGCAGGCGCC
GGAGCCTCGACTCCAACCCCAAGCAGGCGACGGCGTGTCGCCGCGGAGAGGTGTATGA