Detailed information of component protein


Summary

Component ID T6CP001230
Component protein type TssI
T6SS ID (Type) T6SS00127 experimental (Type i1)
Strain Myxococcus xanthus DK 1622
Replicon chromosome
Sequence Protein sequence (755 a.a.); Nucleotide sequence (2265 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) MXAN_RS23330
Coordinate (Strand) 6004071..6006335 (+)
NCBI ID WP_011554786.1
RefSeq NC_008095
Uniprot ID Q1D312_MYXXD, A0A7Y4HE28_MYXXA
KEGG ID mxa:MXAN_4800
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 6.9e-94 34..335
Phage_base_V PF04717.14 3.8e-16 392..461
Gp5_C PF06715.14 5.9e-05 559..581
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-754 MIANAALKANQAEFEFQAGPFTAGELAVLGFEAEETLSQPYAVEVALAARPDVDVDEKALLGQDARLTVMLGDGTARFFHGIVSRMSRWDEGNGPERRRYRATVVPRLWTLRHRRKSRIYQEMTVPDIVHKVLDEAKVEHRLALTGEYPKRDYCVQYRESDLDFVSRLLEEEGIFYFFEHGEDAHMMVIGDGASANPEMQGESKLVFRERSQMVASQEYVHELVSRMEVQPGAVALRDYNFLRPAQDLGASSEAEDGEAALEIYDYPGRYEEPAPGRSLAKVRLEELRARAETVTGASYSRRICVGHSFELAEHPDESANRKYLPVSVRHLGHQSEALSIEQGSLRSREDYRNEFLCQPAEVPFRPPRVTPRPVIPGAQTAIVVGPSGEEIHTDEHGRIKVQFHWDREGKNNDKSSCWIRVSQAWAGPGWGALYLPRIGHEVVVEFLEGDPDRPIVTGSVYNGANPTPIDLPGSKTQSTLRSSSSPGGAGSNELRFEDAAGSELVYLHAQKDFNIVVENDKTQEVRGNETLLVRKDRSRVIEGNQALLVKKNDDSTVTGNQTLAVTQNRSTTVGGNHTEAVAGDQSISVSGNQALTVAMASAETVALGKMLNVGGALAVTVGAAFNELVGGLKSEQVGGAKVEVVGAKKSETVKGARTLQVGGDLSEEVGKSRTLKVDKDMLVSVAGKVNHAAKDAYTLSAKEISLVAQEQFTLKVGSATLQVKKNGDVVIKGAKIEVTATGDVVIKGSKISEN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9744 - -


  Protein sequence: 755 a.a.    

>T6CP001230 NC_008095:6004071-6006335 [Myxococcus xanthus DK 1622] [TssI]
MIANAALKANQAEFEFQAGPFTAGELAVLGFEAEETLSQPYAVEVALAARPDVDVDEKALLGQDARLTVMLGDGTARFFH
GIVSRMSRWDEGNGPERRRYRATVVPRLWTLRHRRKSRIYQEMTVPDIVHKVLDEAKVEHRLALTGEYPKRDYCVQYRES
DLDFVSRLLEEEGIFYFFEHGEDAHMMVIGDGASANPEMQGESKLVFRERSQMVASQEYVHELVSRMEVQPGAVALRDYN
FLRPAQDLGASSEAEDGEAALEIYDYPGRYEEPAPGRSLAKVRLEELRARAETVTGASYSRRICVGHSFELAEHPDESAN
RKYLPVSVRHLGHQSEALSIEQGSLRSREDYRNEFLCQPAEVPFRPPRVTPRPVIPGAQTAIVVGPSGEEIHTDEHGRIK
VQFHWDREGKNNDKSSCWIRVSQAWAGPGWGALYLPRIGHEVVVEFLEGDPDRPIVTGSVYNGANPTPIDLPGSKTQSTL
RSSSSPGGAGSNELRFEDAAGSELVYLHAQKDFNIVVENDKTQEVRGNETLLVRKDRSRVIEGNQALLVKKNDDSTVTGN
QTLAVTQNRSTTVGGNHTEAVAGDQSISVSGNQALTVAMASAETVALGKMLNVGGALAVTVGAAFNELVGGLKSEQVGGA
KVEVVGAKKSETVKGARTLQVGGDLSEEVGKSRTLKVDKDMLVSVAGKVNHAAKDAYTLSAKEISLVAQEQFTLKVGSAT
LQVKKNGDVVIKGAKIEVTATGDVVIKGSKISEN*

  Nucleotide sequence: 2265 bp    

>T6CP001230 NC_008095:6004071-6006335 [Myxococcus xanthus DK 1622] [TssI]
ATGATCGCGAACGCCGCCTTGAAAGCCAACCAGGCTGAGTTCGAGTTCCAGGCAGGGCCCTTCACCGCCGGAGAGCTGGC
CGTCCTTGGCTTTGAAGCCGAGGAGACGCTGTCCCAGCCCTACGCGGTGGAGGTCGCACTGGCCGCCCGGCCGGACGTGG
ACGTGGATGAGAAGGCGCTGCTGGGCCAGGACGCGCGGCTCACCGTCATGCTCGGAGACGGCACCGCGCGCTTCTTCCAC
GGCATCGTGTCGCGCATGTCACGGTGGGATGAAGGCAATGGCCCGGAGCGCCGCCGCTACCGCGCCACCGTGGTGCCGCG
GCTGTGGACGCTGCGCCACCGCCGCAAGAGCCGCATCTACCAGGAGATGACCGTCCCGGACATCGTCCACAAGGTGCTGG
ATGAAGCCAAGGTGGAGCACCGGCTGGCGCTCACCGGCGAGTACCCCAAGCGCGACTACTGCGTGCAGTACCGCGAGTCC
GACCTCGACTTCGTGTCCCGCCTCTTGGAGGAAGAAGGCATCTTCTACTTTTTCGAGCACGGCGAGGACGCCCACATGAT
GGTGATTGGCGACGGCGCCTCCGCCAATCCCGAGATGCAGGGCGAGTCCAAGCTTGTCTTCCGCGAGCGCAGCCAGATGG
TCGCCTCGCAGGAGTACGTCCACGAGCTGGTCTCCCGCATGGAGGTGCAGCCCGGCGCGGTGGCCCTGCGCGACTACAAC
TTCCTGCGTCCCGCCCAGGACCTGGGTGCCAGCTCCGAGGCAGAGGACGGCGAGGCCGCGCTCGAAATCTACGACTACCC
CGGCCGCTATGAAGAGCCCGCGCCCGGCCGCAGCCTGGCGAAGGTGCGCCTGGAGGAGCTGCGCGCGCGGGCGGAGACGG
TGACGGGCGCCAGCTACAGCCGCCGCATCTGCGTGGGCCACTCCTTCGAACTGGCGGAGCACCCGGACGAGTCCGCCAAC
CGCAAGTACCTGCCCGTCTCCGTGCGGCACCTGGGCCACCAGTCGGAGGCGCTGAGCATCGAGCAGGGCTCGCTGCGCAG
CCGGGAGGACTACCGCAACGAATTCCTCTGCCAGCCCGCGGAGGTGCCCTTCCGCCCGCCGCGCGTGACGCCGCGGCCGG
TGATTCCGGGCGCGCAGACGGCCATCGTGGTGGGCCCCAGCGGTGAGGAGATCCACACCGACGAGCACGGCCGCATCAAG
GTCCAGTTCCACTGGGACCGCGAGGGCAAGAACAACGACAAGAGCTCGTGCTGGATCCGCGTCAGCCAGGCCTGGGCGGG
CCCGGGCTGGGGCGCCCTGTACCTGCCGCGCATCGGCCATGAGGTCGTCGTCGAGTTCCTCGAGGGCGACCCGGACCGGC
CCATCGTCACCGGCAGCGTCTACAACGGGGCGAATCCGACGCCCATCGACCTGCCCGGCAGCAAGACGCAGAGCACGCTG
CGCTCCAGCTCCAGCCCCGGCGGCGCGGGCTCCAACGAGCTGCGCTTCGAGGACGCGGCCGGCAGCGAGCTCGTCTATCT
GCACGCGCAGAAGGACTTCAACATCGTCGTGGAGAACGACAAGACGCAGGAGGTCCGCGGCAACGAGACGTTGCTGGTGC
GCAAGGACCGCTCCCGCGTCATCGAGGGCAACCAGGCCCTGCTGGTGAAGAAGAACGACGACAGCACCGTCACCGGCAAC
CAGACGCTGGCCGTCACGCAGAATCGCTCCACCACCGTGGGCGGCAACCACACCGAAGCGGTGGCCGGGGACCAGTCCAT
CAGCGTCAGCGGCAACCAGGCCCTCACGGTGGCCATGGCCTCCGCGGAGACGGTGGCCCTGGGGAAGATGCTCAACGTGG
GCGGCGCGCTCGCCGTCACCGTGGGCGCCGCCTTCAACGAACTGGTGGGCGGCCTCAAGTCCGAACAGGTGGGCGGCGCC
AAGGTGGAGGTCGTCGGCGCCAAGAAGTCCGAGACGGTCAAGGGCGCCCGCACGCTCCAGGTCGGCGGGGACCTCTCCGA
AGAGGTGGGTAAGTCCCGCACGCTCAAGGTGGACAAGGACATGCTGGTCAGCGTGGCCGGCAAGGTGAACCACGCCGCCA
AGGACGCCTACACACTGTCCGCAAAGGAAATCTCACTGGTTGCCCAGGAGCAGTTCACCCTCAAGGTTGGCTCCGCCACG
CTCCAGGTGAAGAAGAACGGGGACGTGGTCATCAAGGGCGCCAAGATTGAGGTCACCGCGACGGGCGACGTCGTCATCAA
GGGCTCCAAGATTTCCGAGAACTAG