Detailed information of component protein
Summary

External database links
Locus tag (Gene) | BTH_RS27320 |
Coordinate (Strand) | 3413466..3414080 (+) |
NCBI ID | WP_025404121.1 |
RefSeq | NC_007651 |
Uniprot ID | A0A1B4JS76_BURTH |
KEGG ID | btha:DR62_836 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS-SciN | PF12790.9 | 4.7e-30 | 55..173 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Inside | 1-6 | MNPLVT |
Transmembrane helix | 7-29 | RYALPLAACILLGGCAAAVPLLG |
Outside | 30-204 | SAGSAALQMVGIGKPDVPDSQKPPRNLGLTLYAAQNLNAANDNRPLALVVRLYALKDPTSFQQAPFDSFTDPAKEKTALGADLLSVREITLIPGQRYNATEKVSREAQAFGVVALFRDPALQRWKLTFDPAKSEKSGIIIGLHNCAMTVTGGTVIPSQQGMPTQRLDLLSSVNCG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
LIPO(Sec/SPII) | 0.8558 | pos: 20-21. LGG-CA. | MNPLVTRYALPLAACILLGG |
Protein sequence: 205 a.a.
>T6CP001094 NC_007651:3413466-3414080 [Burkholderia thailandensis E264] [TssJ]
MNPLVTRYALPLAACILLGGCAAAVPLLGSAGSAALQMVGIGKPDVPDSQKPPRNLGLTLYAAQNLNAANDNRPLALVVR
LYALKDPTSFQQAPFDSFTDPAKEKTALGADLLSVREITLIPGQRYNATEKVSREAQAFGVVALFRDPALQRWKLTFDPA
KSEKSGIIIGLHNCAMTVTGGTVIPSQQGMPTQRLDLLSSVNCG*
MNPLVTRYALPLAACILLGGCAAAVPLLGSAGSAALQMVGIGKPDVPDSQKPPRNLGLTLYAAQNLNAANDNRPLALVVR
LYALKDPTSFQQAPFDSFTDPAKEKTALGADLLSVREITLIPGQRYNATEKVSREAQAFGVVALFRDPALQRWKLTFDPA
KSEKSGIIIGLHNCAMTVTGGTVIPSQQGMPTQRLDLLSSVNCG*
Nucleotide sequence: 615 bp
>T6CP001094 NC_007651:3413466-3414080 [Burkholderia thailandensis E264] [TssJ]
ATGAATCCGCTTGTGACTCGTTACGCGTTGCCGCTCGCCGCCTGCATTCTGCTCGGCGGCTGCGCGGCCGCCGTGCCGCT
CCTCGGTTCGGCGGGCAGCGCCGCGCTGCAGATGGTGGGCATCGGCAAGCCCGACGTGCCCGATTCGCAAAAGCCGCCGC
GCAATCTCGGCCTCACGCTCTACGCCGCGCAGAACCTCAACGCCGCGAACGACAACCGCCCGCTCGCGCTTGTCGTGCGC
CTCTACGCGCTGAAAGACCCGACGTCGTTCCAGCAGGCGCCGTTCGACAGCTTCACCGATCCAGCGAAAGAGAAGACCGC
GCTCGGCGCCGATCTGCTGAGCGTGCGCGAAATCACGCTGATTCCCGGACAGCGCTACAACGCGACAGAGAAGGTATCGC
GCGAAGCGCAGGCATTCGGCGTCGTCGCGCTCTTTCGCGACCCGGCGCTGCAGCGCTGGAAACTGACTTTCGATCCGGCG
AAGTCCGAGAAATCCGGCATAATTATCGGCCTGCACAACTGCGCGATGACCGTGACGGGCGGCACCGTCATTCCTTCGCA
GCAGGGCATGCCGACGCAGCGGCTCGATTTGCTTTCGTCGGTGAACTGCGGGTGA
ATGAATCCGCTTGTGACTCGTTACGCGTTGCCGCTCGCCGCCTGCATTCTGCTCGGCGGCTGCGCGGCCGCCGTGCCGCT
CCTCGGTTCGGCGGGCAGCGCCGCGCTGCAGATGGTGGGCATCGGCAAGCCCGACGTGCCCGATTCGCAAAAGCCGCCGC
GCAATCTCGGCCTCACGCTCTACGCCGCGCAGAACCTCAACGCCGCGAACGACAACCGCCCGCTCGCGCTTGTCGTGCGC
CTCTACGCGCTGAAAGACCCGACGTCGTTCCAGCAGGCGCCGTTCGACAGCTTCACCGATCCAGCGAAAGAGAAGACCGC
GCTCGGCGCCGATCTGCTGAGCGTGCGCGAAATCACGCTGATTCCCGGACAGCGCTACAACGCGACAGAGAAGGTATCGC
GCGAAGCGCAGGCATTCGGCGTCGTCGCGCTCTTTCGCGACCCGGCGCTGCAGCGCTGGAAACTGACTTTCGATCCGGCG
AAGTCCGAGAAATCCGGCATAATTATCGGCCTGCACAACTGCGCGATGACCGTGACGGGCGGCACCGTCATTCCTTCGCA
GCAGGGCATGCCGACGCAGCGGCTCGATTTGCTTTCGTCGGTGAACTGCGGGTGA