Detailed information of component protein
Summary

External database links
Locus tag (Gene) | BTH_RS27310 |
Coordinate (Strand) | 3411848..3412366 (-) |
NCBI ID | WP_009888592.1 |
RefSeq | NC_007651 |
Uniprot ID | Q2SUC8_BURTA, A0A1B4JS42_BURTH |
KEGG ID | btha:DR62_834, bte:BTH_I2964 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VipA | PF05591.14 | 2.5e-60 | 12..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-172 | MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEIKELPFVVGVVGDLAGQSEVEQPKLRDRKFVNIDRDNFDDVMKAIEPRATFQVENRLSDAGGKFAVDLKFRSINDFNPDEVVGQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLEALKKGADGGDKQGE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9960 | - | - |
Protein sequence: 173 a.a.
>T6CP001093 NC_007651:c3412366-3411848 [Burkholderia thailandensis E264] [TssB]
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEIKELPFVVGVVGDLAGQSEVEQPKLRDRKFVNIDRDNFDDVMKAIEPR
ATFQVENRLSDAGGKFAVDLKFRSINDFNPDEVVGQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLEAL
KKGADGGDKQGE*
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEIKELPFVVGVVGDLAGQSEVEQPKLRDRKFVNIDRDNFDDVMKAIEPR
ATFQVENRLSDAGGKFAVDLKFRSINDFNPDEVVGQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLEAL
KKGADGGDKQGE*
Nucleotide sequence: 519 bp
>T6CP001093 NC_007651:c3412366-3411848 [Burkholderia thailandensis E264] [TssB]
ATGGCGAAGAAAGAAAGCATTCAAAAGCGCTTGCAGAAAGTGCGGCCGCCCCGCGTCCAGCTCACGTACGAAGTCGAACG
GGGCGACGCGATCGAGATCAAGGAATTGCCGTTCGTCGTCGGGGTCGTCGGCGATCTGGCGGGGCAGTCGGAAGTCGAGC
AGCCGAAGCTGCGCGATCGCAAGTTCGTCAACATCGACCGCGACAACTTCGACGACGTGATGAAGGCGATCGAGCCGCGC
GCCACGTTCCAGGTGGAGAACCGTCTGAGCGACGCGGGCGGCAAGTTCGCGGTCGATCTGAAGTTCCGATCGATCAACGA
TTTCAATCCGGACGAGGTCGTCGGGCAGGTCGAGCCGTTGCGGCGCCTGCTCGAGGCGCGATCGAAGCTCGCTGACCTGC
GCAACAAGCTGGCCGGCAACGACAAGCTCGAAGACCTGCTGAGCGAAGTGCTGTCGAACACGCAGCAGCTCGAAGCGCTG
AAGAAGGGCGCGGACGGCGGCGACAAGCAGGGCGAATGA
ATGGCGAAGAAAGAAAGCATTCAAAAGCGCTTGCAGAAAGTGCGGCCGCCCCGCGTCCAGCTCACGTACGAAGTCGAACG
GGGCGACGCGATCGAGATCAAGGAATTGCCGTTCGTCGTCGGGGTCGTCGGCGATCTGGCGGGGCAGTCGGAAGTCGAGC
AGCCGAAGCTGCGCGATCGCAAGTTCGTCAACATCGACCGCGACAACTTCGACGACGTGATGAAGGCGATCGAGCCGCGC
GCCACGTTCCAGGTGGAGAACCGTCTGAGCGACGCGGGCGGCAAGTTCGCGGTCGATCTGAAGTTCCGATCGATCAACGA
TTTCAATCCGGACGAGGTCGTCGGGCAGGTCGAGCCGTTGCGGCGCCTGCTCGAGGCGCGATCGAAGCTCGCTGACCTGC
GCAACAAGCTGGCCGGCAACGACAAGCTCGAAGACCTGCTGAGCGAAGTGCTGTCGAACACGCAGCAGCTCGAAGCGCTG
AAGAAGGGCGCGGACGGCGGCGACAAGCAGGGCGAATGA