Detailed information of component protein


Summary

Component ID T6CP001091
Component protein type TssD
T6SS ID (Type) T6SS00115 experimental (Type i4b)
Strain Burkholderia thailandensis E264
Replicon chromosome I
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
[1] Russell AB, Singh P, Brittnacher M, et al. A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host Microbe. 2012 May 17;11(5):538-49. doi: 10.1016/j.chom.2012.04.007. PMID: 22607806
[2] Schwarz S, West TE, Boyer F, et al. Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions. PLoS Pathog. 2010 Aug 26;6(8):e1001068. doi: 10.1371/journal.ppat.1001068. PMID: 20865170
[3] Russell AB, LeRoux M, Hathazi K, et al. Diverse type VI secretion phospholipases are functionally plastic antibacterial effectors. Nature. 2013 Apr 25;496(7446):508-12. doi: 10.1038/nature12074. Epub 2013 Apr 3. PMID: 23552891
[4] Fisher NA, Ribot WJ, Applefeld W, et al. The Madagascar hissing cockroach as a novel surrogate host for Burkholderia pseudomallei, B. mallei and B. thailandensis. BMC Microbiol. 2012 Jun 22;12:117. doi: 10.1186/1471-2180-12-117. PMID: 22892068
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BTH_RS27300
Coordinate (Strand) 3409765..3410268 (-)
NCBI ID WP_009906860.1
RefSeq NC_007651
Uniprot ID A0A1B4JS43_BURTH, Q2SUD0_BURTA
KEGG ID btha:DR62_832, bte:BTH_I2962
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 5.9e-39 8..138

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-167 MLHMHLKFGSPAIKGESADKDHEGWIELKSWDHSIVQPRSATASTAGGHTATRCEHGDMVFTKEIDSSSPLLYQHASGGTTFDEVTVDFLRADGEGQRVKYLEIKLKYVIISSIAPSVHNEGLPLETFSLKYAAVQWKQTQQKIGGNQGGNTQGAWSLTKNDKTYAV



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9558 - -



  Protein sequence: 168 a.a.    

>T6CP001091 NC_007651:c3410268-3409765 [Burkholderia thailandensis E264] [TssD]
MLHMHLKFGSPAIKGESADKDHEGWIELKSWDHSIVQPRSATASTAGGHTATRCEHGDMVFTKEIDSSSPLLYQHASGGT
TFDEVTVDFLRADGEGQRVKYLEIKLKYVIISSIAPSVHNEGLPLETFSLKYAAVQWKQTQQKIGGNQGGNTQGAWSLTK
NDKTYAV*

  Nucleotide sequence: 504 bp    

>T6CP001091 NC_007651:c3410268-3409765 [Burkholderia thailandensis E264] [TssD]
ATGTTACATATGCATTTGAAGTTCGGTAGTCCCGCCATCAAGGGCGAGTCCGCCGACAAGGACCACGAAGGCTGGATCGA
ACTGAAATCCTGGGATCACTCGATCGTTCAGCCGCGTTCGGCAACCGCGTCGACCGCGGGCGGCCACACGGCAACGCGTT
GCGAGCACGGCGACATGGTGTTCACGAAGGAAATCGATTCGTCGAGCCCGCTGCTGTATCAGCACGCGTCGGGCGGCACC
ACGTTCGACGAGGTGACGGTCGATTTCCTGCGCGCGGATGGCGAAGGCCAGCGCGTCAAGTACCTCGAGATCAAGCTGAA
GTACGTGATCATCTCGAGCATCGCGCCGAGCGTGCACAACGAAGGCCTGCCGCTCGAGACCTTCTCGCTGAAGTACGCCG
CGGTTCAGTGGAAGCAGACCCAGCAGAAGATCGGCGGCAACCAGGGCGGCAACACGCAGGGCGCCTGGAGCCTCACGAAG
AACGACAAGACCTACGCGGTCTAA