Detailed information of component protein
Summary

External database links
Locus tag (Gene) | BTH_RS27295 |
Coordinate (Strand) | 3409225..3409707 (-) |
NCBI ID | WP_009888597.1 |
RefSeq | NC_007651 |
Uniprot ID | Q2SUD1_BURTA, A0A7U1K8J9_BURTH |
KEGG ID | bte:BTH_I2961 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 5.5e-22 | 32..132 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-160 | MKRFEPSFLDKLFDDEPHVPAPAAMRQLSLEELKNTVARDVEAILNTRIALTEEDLAALPECQRSVLTYGLNDFAGLSLASHYDRTFICKSIQQAIARHEPRLQQVQVTFELNEQSTNALYFAIQALLVVHPAEEPVTFDAMLQPSTLQYSVTRSRAAKV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9879 | - | - |
Protein sequence: 161 a.a.
>T6CP001090 NC_007651:c3409707-3409225 [Burkholderia thailandensis E264] [TssE]
MKRFEPSFLDKLFDDEPHVPAPAAMRQLSLEELKNTVARDVEAILNTRIALTEEDLAALPECQRSVLTYGLNDFAGLSLA
SHYDRTFICKSIQQAIARHEPRLQQVQVTFELNEQSTNALYFAIQALLVVHPAEEPVTFDAMLQPSTLQYSVTRSRAAKV
*
MKRFEPSFLDKLFDDEPHVPAPAAMRQLSLEELKNTVARDVEAILNTRIALTEEDLAALPECQRSVLTYGLNDFAGLSLA
SHYDRTFICKSIQQAIARHEPRLQQVQVTFELNEQSTNALYFAIQALLVVHPAEEPVTFDAMLQPSTLQYSVTRSRAAKV
*
Nucleotide sequence: 483 bp
>T6CP001090 NC_007651:c3409707-3409225 [Burkholderia thailandensis E264] [TssE]
ATGAAACGCTTCGAACCGAGCTTCCTCGACAAGCTGTTCGACGACGAACCGCATGTGCCGGCGCCCGCCGCGATGCGGCA
ATTGTCGCTGGAGGAACTGAAGAACACGGTCGCGCGCGACGTCGAGGCGATCCTCAACACGCGCATCGCGCTGACCGAAG
AAGATCTCGCCGCGCTGCCGGAATGCCAGCGCTCGGTGCTGACTTACGGGCTGAACGACTTCGCCGGCCTGAGCCTCGCG
AGCCACTACGACCGCACGTTCATCTGCAAGTCGATTCAGCAGGCGATCGCGCGGCACGAGCCGAGGCTGCAGCAGGTGCA
GGTGACGTTCGAGCTGAACGAGCAGTCGACGAACGCGCTCTATTTCGCGATCCAGGCGCTGCTCGTCGTGCATCCCGCCG
AGGAGCCGGTGACCTTCGATGCGATGCTGCAGCCGTCGACGTTGCAATACTCGGTGACGCGCTCGCGCGCCGCCAAGGTG
TGA
ATGAAACGCTTCGAACCGAGCTTCCTCGACAAGCTGTTCGACGACGAACCGCATGTGCCGGCGCCCGCCGCGATGCGGCA
ATTGTCGCTGGAGGAACTGAAGAACACGGTCGCGCGCGACGTCGAGGCGATCCTCAACACGCGCATCGCGCTGACCGAAG
AAGATCTCGCCGCGCTGCCGGAATGCCAGCGCTCGGTGCTGACTTACGGGCTGAACGACTTCGCCGGCCTGAGCCTCGCG
AGCCACTACGACCGCACGTTCATCTGCAAGTCGATTCAGCAGGCGATCGCGCGGCACGAGCCGAGGCTGCAGCAGGTGCA
GGTGACGTTCGAGCTGAACGAGCAGTCGACGAACGCGCTCTATTTCGCGATCCAGGCGCTGCTCGTCGTGCATCCCGCCG
AGGAGCCGGTGACCTTCGATGCGATGCTGCAGCCGTCGACGTTGCAATACTCGGTGACGCGCTCGCGCGCCGCCAAGGTG
TGA