Detailed information of component protein
Summary

External database links
Locus tag (Gene) | BTH_RS27290 |
Coordinate (Strand) | 3407306..3409144 (-) |
NCBI ID | WP_009888599.1 |
RefSeq | NC_007651 |
Uniprot ID | Q2SUD2_BURTA |
KEGG ID | bte:BTH_I2960 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssF | PF05947.14 | 1.3e-189 | 2..608 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-612 | MEELLPYYERELSFLRRYSLEFANRYPKIAARLAQTGEHCEDPHVERMIESFALLGARINKKLDDEYPEFTEALVEVLYPHYLRPFPSCSIAQFGASHAFAELTEPQVVERGTELKSRAIRGVQCRFRTAYDVTLAPIRLADARYGSIAAAPAAAALPGNATGVISITFESTSPQLDLAALKLGKLRAHLHGEQSFVAALTDCLFAHALACYVEPDRSGRWIALGKTPFEHAGFDETDALIDYPARSHPAYRLLTEYFAFPDKFNFVDFDLGVLARRAGHCRQLTLHVALRDVRSDSHVARLLDLLSASHFRLFCTPVVNLFRQHGEPIRVDHRAVSYPVIGDARRAFAYEVYSIDSVHLVRQRADRETVVEFRSFYSLHHGEAAQAGHYWFARRNDDVARKSPGYETEISIVDVDFEPGAPQTDTLSLDLTCTNRDLPAALATGLDGGDLFIDGGAQPGPIALLRRPTPSARFERGHAAHWRLVSHLALNHVSLAEEGLAALKEVLVLYDLRRSAVSTRHIDGIVGIEQKSAVQWLPGKPFATFVRGVEIRLAIDDEHFVGSSLATFVRMIDAFFGLYVHLNSFVQLIVVSKRTGEEIMRCKPRSGESILA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9923 | - | - |
Protein sequence: 613 a.a.
>T6CP001089 NC_007651:c3409144-3407306 [Burkholderia thailandensis E264] [TssF]
MEELLPYYERELSFLRRYSLEFANRYPKIAARLAQTGEHCEDPHVERMIESFALLGARINKKLDDEYPEFTEALVEVLYP
HYLRPFPSCSIAQFGASHAFAELTEPQVVERGTELKSRAIRGVQCRFRTAYDVTLAPIRLADARYGSIAAAPAAAALPGN
ATGVISITFESTSPQLDLAALKLGKLRAHLHGEQSFVAALTDCLFAHALACYVEPDRSGRWIALGKTPFEHAGFDETDAL
IDYPARSHPAYRLLTEYFAFPDKFNFVDFDLGVLARRAGHCRQLTLHVALRDVRSDSHVARLLDLLSASHFRLFCTPVVN
LFRQHGEPIRVDHRAVSYPVIGDARRAFAYEVYSIDSVHLVRQRADRETVVEFRSFYSLHHGEAAQAGHYWFARRNDDVA
RKSPGYETEISIVDVDFEPGAPQTDTLSLDLTCTNRDLPAALATGLDGGDLFIDGGAQPGPIALLRRPTPSARFERGHAA
HWRLVSHLALNHVSLAEEGLAALKEVLVLYDLRRSAVSTRHIDGIVGIEQKSAVQWLPGKPFATFVRGVEIRLAIDDEHF
VGSSLATFVRMIDAFFGLYVHLNSFVQLIVVSKRTGEEIMRCKPRSGESILA*
MEELLPYYERELSFLRRYSLEFANRYPKIAARLAQTGEHCEDPHVERMIESFALLGARINKKLDDEYPEFTEALVEVLYP
HYLRPFPSCSIAQFGASHAFAELTEPQVVERGTELKSRAIRGVQCRFRTAYDVTLAPIRLADARYGSIAAAPAAAALPGN
ATGVISITFESTSPQLDLAALKLGKLRAHLHGEQSFVAALTDCLFAHALACYVEPDRSGRWIALGKTPFEHAGFDETDAL
IDYPARSHPAYRLLTEYFAFPDKFNFVDFDLGVLARRAGHCRQLTLHVALRDVRSDSHVARLLDLLSASHFRLFCTPVVN
LFRQHGEPIRVDHRAVSYPVIGDARRAFAYEVYSIDSVHLVRQRADRETVVEFRSFYSLHHGEAAQAGHYWFARRNDDVA
RKSPGYETEISIVDVDFEPGAPQTDTLSLDLTCTNRDLPAALATGLDGGDLFIDGGAQPGPIALLRRPTPSARFERGHAA
HWRLVSHLALNHVSLAEEGLAALKEVLVLYDLRRSAVSTRHIDGIVGIEQKSAVQWLPGKPFATFVRGVEIRLAIDDEHF
VGSSLATFVRMIDAFFGLYVHLNSFVQLIVVSKRTGEEIMRCKPRSGESILA*
Nucleotide sequence: 1839 bp
>T6CP001089 NC_007651:c3409144-3407306 [Burkholderia thailandensis E264] [TssF]
ATGGAAGAGTTGTTGCCGTATTACGAACGCGAACTGTCGTTTCTGCGGCGCTATTCGCTCGAATTCGCGAACCGGTACCC
GAAGATCGCCGCGCGCCTCGCGCAGACGGGCGAGCACTGCGAAGACCCGCACGTCGAGCGGATGATCGAATCGTTCGCGC
TGCTCGGCGCGCGGATCAACAAGAAGCTCGACGACGAGTATCCCGAATTCACCGAAGCGCTTGTCGAAGTCCTCTATCCG
CATTATTTGCGGCCGTTCCCTTCATGCTCGATCGCGCAGTTCGGCGCGTCGCATGCGTTCGCCGAACTGACCGAGCCGCA
GGTCGTCGAGCGCGGCACCGAGTTGAAGAGCCGCGCGATTCGAGGCGTGCAGTGCCGGTTCCGCACCGCGTACGACGTGA
CGCTCGCGCCGATTCGGCTCGCCGATGCCCGCTACGGATCGATCGCCGCGGCGCCCGCCGCGGCCGCGCTGCCCGGCAAC
GCGACAGGCGTGATCTCGATCACGTTCGAATCGACGTCGCCGCAGCTCGACCTTGCGGCGCTGAAGCTCGGCAAGCTGCG
CGCGCATCTGCACGGCGAGCAGTCGTTCGTCGCCGCACTGACTGATTGCCTGTTCGCGCACGCGCTCGCCTGCTACGTCG
AGCCCGATCGCAGCGGCCGCTGGATCGCGCTCGGCAAGACACCGTTCGAGCACGCGGGATTCGACGAGACCGACGCGCTG
ATCGACTATCCTGCCCGTTCGCACCCGGCCTATAGGCTGCTGACCGAATACTTCGCATTCCCGGACAAATTCAACTTTGT
CGACTTCGACCTGGGCGTGCTCGCGCGGCGCGCCGGGCATTGCCGGCAACTGACGCTGCACGTCGCGCTGCGCGACGTGC
GCAGCGATTCGCACGTCGCGCGGCTGCTCGATCTGTTGAGCGCGAGCCACTTTCGGCTGTTCTGCACGCCGGTCGTGAAC
CTGTTCCGCCAGCACGGCGAGCCGATCCGGGTCGACCATCGGGCGGTGTCTTATCCGGTGATCGGCGATGCGCGCCGCGC
GTTCGCGTACGAGGTTTATTCGATCGATTCGGTGCACCTCGTGCGGCAGCGCGCGGATCGCGAAACGGTTGTCGAGTTTC
GGTCGTTCTACTCGCTGCATCACGGCGAGGCGGCGCAGGCCGGCCACTACTGGTTCGCGCGCCGCAACGACGATGTCGCG
CGCAAGAGCCCCGGCTATGAGACCGAGATTTCGATCGTCGATGTCGATTTCGAGCCGGGCGCGCCGCAGACCGACACGCT
GAGCCTCGACCTCACCTGCACGAACCGCGATTTGCCCGCGGCGCTCGCGACCGGGCTCGACGGCGGCGATCTCTTCATCG
ACGGCGGCGCGCAGCCCGGCCCGATCGCGCTGCTGCGCCGGCCGACGCCGAGCGCGCGCTTCGAGCGCGGCCACGCCGCG
CACTGGCGGCTCGTGTCGCATCTCGCGCTCAATCACGTTTCGCTTGCCGAAGAGGGGCTCGCCGCGCTGAAGGAGGTGCT
CGTGCTGTACGATCTGAGACGTTCCGCTGTGTCGACGCGGCACATCGACGGGATCGTCGGCATCGAGCAGAAGAGTGCCG
TGCAGTGGCTGCCGGGCAAGCCGTTCGCGACGTTCGTGCGCGGCGTCGAGATCCGGCTCGCGATCGACGACGAGCATTTC
GTCGGTTCGAGCCTCGCGACGTTCGTGCGGATGATCGACGCATTCTTCGGACTGTACGTGCACCTCAACAGCTTTGTTCA
ACTGATCGTCGTGTCCAAGCGCACCGGCGAGGAGATCATGCGATGCAAACCGCGCAGCGGCGAATCGATCCTGGCGTAG
ATGGAAGAGTTGTTGCCGTATTACGAACGCGAACTGTCGTTTCTGCGGCGCTATTCGCTCGAATTCGCGAACCGGTACCC
GAAGATCGCCGCGCGCCTCGCGCAGACGGGCGAGCACTGCGAAGACCCGCACGTCGAGCGGATGATCGAATCGTTCGCGC
TGCTCGGCGCGCGGATCAACAAGAAGCTCGACGACGAGTATCCCGAATTCACCGAAGCGCTTGTCGAAGTCCTCTATCCG
CATTATTTGCGGCCGTTCCCTTCATGCTCGATCGCGCAGTTCGGCGCGTCGCATGCGTTCGCCGAACTGACCGAGCCGCA
GGTCGTCGAGCGCGGCACCGAGTTGAAGAGCCGCGCGATTCGAGGCGTGCAGTGCCGGTTCCGCACCGCGTACGACGTGA
CGCTCGCGCCGATTCGGCTCGCCGATGCCCGCTACGGATCGATCGCCGCGGCGCCCGCCGCGGCCGCGCTGCCCGGCAAC
GCGACAGGCGTGATCTCGATCACGTTCGAATCGACGTCGCCGCAGCTCGACCTTGCGGCGCTGAAGCTCGGCAAGCTGCG
CGCGCATCTGCACGGCGAGCAGTCGTTCGTCGCCGCACTGACTGATTGCCTGTTCGCGCACGCGCTCGCCTGCTACGTCG
AGCCCGATCGCAGCGGCCGCTGGATCGCGCTCGGCAAGACACCGTTCGAGCACGCGGGATTCGACGAGACCGACGCGCTG
ATCGACTATCCTGCCCGTTCGCACCCGGCCTATAGGCTGCTGACCGAATACTTCGCATTCCCGGACAAATTCAACTTTGT
CGACTTCGACCTGGGCGTGCTCGCGCGGCGCGCCGGGCATTGCCGGCAACTGACGCTGCACGTCGCGCTGCGCGACGTGC
GCAGCGATTCGCACGTCGCGCGGCTGCTCGATCTGTTGAGCGCGAGCCACTTTCGGCTGTTCTGCACGCCGGTCGTGAAC
CTGTTCCGCCAGCACGGCGAGCCGATCCGGGTCGACCATCGGGCGGTGTCTTATCCGGTGATCGGCGATGCGCGCCGCGC
GTTCGCGTACGAGGTTTATTCGATCGATTCGGTGCACCTCGTGCGGCAGCGCGCGGATCGCGAAACGGTTGTCGAGTTTC
GGTCGTTCTACTCGCTGCATCACGGCGAGGCGGCGCAGGCCGGCCACTACTGGTTCGCGCGCCGCAACGACGATGTCGCG
CGCAAGAGCCCCGGCTATGAGACCGAGATTTCGATCGTCGATGTCGATTTCGAGCCGGGCGCGCCGCAGACCGACACGCT
GAGCCTCGACCTCACCTGCACGAACCGCGATTTGCCCGCGGCGCTCGCGACCGGGCTCGACGGCGGCGATCTCTTCATCG
ACGGCGGCGCGCAGCCCGGCCCGATCGCGCTGCTGCGCCGGCCGACGCCGAGCGCGCGCTTCGAGCGCGGCCACGCCGCG
CACTGGCGGCTCGTGTCGCATCTCGCGCTCAATCACGTTTCGCTTGCCGAAGAGGGGCTCGCCGCGCTGAAGGAGGTGCT
CGTGCTGTACGATCTGAGACGTTCCGCTGTGTCGACGCGGCACATCGACGGGATCGTCGGCATCGAGCAGAAGAGTGCCG
TGCAGTGGCTGCCGGGCAAGCCGTTCGCGACGTTCGTGCGCGGCGTCGAGATCCGGCTCGCGATCGACGACGAGCATTTC
GTCGGTTCGAGCCTCGCGACGTTCGTGCGGATGATCGACGCATTCTTCGGACTGTACGTGCACCTCAACAGCTTTGTTCA
ACTGATCGTCGTGTCCAAGCGCACCGGCGAGGAGATCATGCGATGCAAACCGCGCAGCGGCGAATCGATCCTGGCGTAG