Detailed information of component protein
Summary
External database links
Locus tag (Gene) | BTH_RS27275 |
Coordinate (Strand) | 3402329..3403459 (-) |
NCBI ID | WP_009888602.1 |
RefSeq | NC_007651 |
Uniprot ID | A0A7X3DR20_BURTH |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
ImpA_N | PF06812.14 | 9.6e-37 | 9..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-376 | MPINLTELLTPISEASPCGDDLLFSAEFDAIQHARKFDDPSLDQGEWITDIKEADWGFVVEQSSTLLRERTKDLRLAVWLTEALALEDGIGGLTQGYELLTNLCRQFWDHVHPLPDGDDAEYRLGNVAWLAGRTVALLRAVPLTDGASNAFSELDWDVAQHVAQAIRRDPEQANEIARGKPSVEQIEASKRMTPVAFYARLLGELKTFQAALDALEQELDQRAGDAAPSFRQARDAYETVYRLAERFAKEQGYSADAQPRGVAPNAQDASRERAEPSFRTPLHSEEPVQRHAHAPSAPAPIVIAGIQNRAQAVEQLRAVAKYFRGTEPHSPVAYLADKAAEWADMPLHQWLASVVKDDGSLAHIRELLGLKPDDNA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9720 | - | - |
Protein sequence: 377 a.a.
>T6CP001086 NC_007651:c3403459-3402329 [Burkholderia thailandensis E264] [TssA]
MPINLTELLTPISEASPCGDDLLFSAEFDAIQHARKFDDPSLDQGEWITDIKEADWGFVVEQSSTLLRERTKDLRLAVWL
TEALALEDGIGGLTQGYELLTNLCRQFWDHVHPLPDGDDAEYRLGNVAWLAGRTVALLRAVPLTDGASNAFSELDWDVAQ
HVAQAIRRDPEQANEIARGKPSVEQIEASKRMTPVAFYARLLGELKTFQAALDALEQELDQRAGDAAPSFRQARDAYETV
YRLAERFAKEQGYSADAQPRGVAPNAQDASRERAEPSFRTPLHSEEPVQRHAHAPSAPAPIVIAGIQNRAQAVEQLRAVA
KYFRGTEPHSPVAYLADKAAEWADMPLHQWLASVVKDDGSLAHIRELLGLKPDDNA*
MPINLTELLTPISEASPCGDDLLFSAEFDAIQHARKFDDPSLDQGEWITDIKEADWGFVVEQSSTLLRERTKDLRLAVWL
TEALALEDGIGGLTQGYELLTNLCRQFWDHVHPLPDGDDAEYRLGNVAWLAGRTVALLRAVPLTDGASNAFSELDWDVAQ
HVAQAIRRDPEQANEIARGKPSVEQIEASKRMTPVAFYARLLGELKTFQAALDALEQELDQRAGDAAPSFRQARDAYETV
YRLAERFAKEQGYSADAQPRGVAPNAQDASRERAEPSFRTPLHSEEPVQRHAHAPSAPAPIVIAGIQNRAQAVEQLRAVA
KYFRGTEPHSPVAYLADKAAEWADMPLHQWLASVVKDDGSLAHIRELLGLKPDDNA*
Nucleotide sequence: 1131 bp
>T6CP001086 NC_007651:c3403459-3402329 [Burkholderia thailandensis E264] [TssA]
ATGCCGATCAACCTTACCGAGTTGCTGACGCCGATCAGCGAAGCGTCGCCTTGCGGCGACGATCTCCTGTTCTCCGCCGA
ATTCGACGCGATCCAGCACGCGCGCAAGTTCGACGATCCGTCGCTCGACCAGGGCGAATGGATCACCGACATCAAGGAGG
CGGACTGGGGCTTCGTCGTCGAGCAATCGAGCACGCTGTTGCGCGAGCGCACCAAGGACCTGCGGCTCGCCGTATGGCTG
ACCGAGGCGCTCGCGCTCGAGGACGGCATCGGCGGGCTCACGCAGGGCTACGAACTGCTCACGAACCTCTGCCGGCAATT
CTGGGATCACGTACACCCGCTGCCGGACGGCGACGATGCCGAATACCGGCTCGGCAACGTCGCGTGGCTCGCCGGGCGCA
CGGTCGCGCTGCTGCGCGCGGTGCCGCTTACCGACGGCGCGTCGAACGCGTTCAGCGAGCTCGACTGGGACGTTGCGCAA
CACGTCGCGCAGGCGATCCGGCGCGATCCCGAGCAGGCGAACGAGATCGCGCGCGGCAAGCCGTCGGTCGAGCAGATCGA
GGCGTCGAAGCGGATGACACCCGTTGCGTTCTACGCGCGGCTGCTCGGCGAACTGAAAACGTTCCAGGCGGCGCTCGACG
CGCTCGAGCAGGAACTCGACCAACGCGCGGGCGACGCGGCGCCGAGCTTCCGTCAGGCGCGCGATGCGTACGAAACCGTC
TACCGGCTTGCCGAGCGTTTCGCGAAGGAGCAGGGCTACTCGGCCGATGCGCAGCCGCGGGGCGTCGCGCCGAATGCGCA
GGACGCATCGCGCGAGCGCGCGGAGCCGAGCTTCAGGACGCCGCTTCATTCGGAGGAACCCGTGCAGAGACACGCACACG
CGCCGTCCGCGCCCGCGCCGATCGTGATCGCCGGCATCCAGAATCGCGCGCAAGCGGTCGAGCAACTGCGCGCGGTCGCA
AAGTATTTTCGCGGAACCGAGCCGCACAGCCCGGTTGCGTATCTCGCCGACAAGGCGGCAGAGTGGGCCGACATGCCGCT
GCATCAATGGCTCGCGTCGGTCGTCAAGGACGACGGCTCGCTCGCGCATATCCGCGAGCTGCTCGGCCTGAAGCCGGACG
ACAACGCGTGA
ATGCCGATCAACCTTACCGAGTTGCTGACGCCGATCAGCGAAGCGTCGCCTTGCGGCGACGATCTCCTGTTCTCCGCCGA
ATTCGACGCGATCCAGCACGCGCGCAAGTTCGACGATCCGTCGCTCGACCAGGGCGAATGGATCACCGACATCAAGGAGG
CGGACTGGGGCTTCGTCGTCGAGCAATCGAGCACGCTGTTGCGCGAGCGCACCAAGGACCTGCGGCTCGCCGTATGGCTG
ACCGAGGCGCTCGCGCTCGAGGACGGCATCGGCGGGCTCACGCAGGGCTACGAACTGCTCACGAACCTCTGCCGGCAATT
CTGGGATCACGTACACCCGCTGCCGGACGGCGACGATGCCGAATACCGGCTCGGCAACGTCGCGTGGCTCGCCGGGCGCA
CGGTCGCGCTGCTGCGCGCGGTGCCGCTTACCGACGGCGCGTCGAACGCGTTCAGCGAGCTCGACTGGGACGTTGCGCAA
CACGTCGCGCAGGCGATCCGGCGCGATCCCGAGCAGGCGAACGAGATCGCGCGCGGCAAGCCGTCGGTCGAGCAGATCGA
GGCGTCGAAGCGGATGACACCCGTTGCGTTCTACGCGCGGCTGCTCGGCGAACTGAAAACGTTCCAGGCGGCGCTCGACG
CGCTCGAGCAGGAACTCGACCAACGCGCGGGCGACGCGGCGCCGAGCTTCCGTCAGGCGCGCGATGCGTACGAAACCGTC
TACCGGCTTGCCGAGCGTTTCGCGAAGGAGCAGGGCTACTCGGCCGATGCGCAGCCGCGGGGCGTCGCGCCGAATGCGCA
GGACGCATCGCGCGAGCGCGCGGAGCCGAGCTTCAGGACGCCGCTTCATTCGGAGGAACCCGTGCAGAGACACGCACACG
CGCCGTCCGCGCCCGCGCCGATCGTGATCGCCGGCATCCAGAATCGCGCGCAAGCGGTCGAGCAACTGCGCGCGGTCGCA
AAGTATTTTCGCGGAACCGAGCCGCACAGCCCGGTTGCGTATCTCGCCGACAAGGCGGCAGAGTGGGCCGACATGCCGCT
GCATCAATGGCTCGCGTCGGTCGTCAAGGACGACGGCTCGCTCGCGCATATCCGCGAGCTGCTCGGCCTGAAGCCGGACG
ACAACGCGTGA