Detailed information of component protein


Summary

Component ID T6CP001083
Component protein type TssB
T6SS ID (Type) T6SS00114 experimental (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (184 a.a.); Nucleotide sequence (552 bp)
Reference
[1] Russell AB, Singh P, Brittnacher M, et al. A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach. Cell Host Microbe. 2012 May 17;11(5):538-49. doi: 10.1016/j.chom.2012.04.007. PMID: 22607806
[2] Schwarz S, West TE, Boyer F, et al. Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions. PLoS Pathog. 2010 Aug 26;6(8):e1001068. doi: 10.1371/journal.ppat.1001068. PMID: 20865170
[3] Si M, Wang Y, Zhang B, et al. The Type VI Secretion System Engages a Redox-Regulated Dual-Functional Heme Transporter for Zinc Acquisition. Cell Rep. 2017 Jul 25;20(4):949-959. doi: 10.1016/j.celrep.2017.06.081. PMID: 28746878
[4] Si M, Zhao C, Burkinshaw B, et al. Manganese scavenging and oxidative stress response mediated by type VI secretion system in Burkholderia thailandensis. Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):E2233-E2242. doi: 10.1073/pnas.1614902114. Epub 2017 Feb 27. PMID: 28242693
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS09730
Coordinate (Strand) 2307040..2307591 (-)
NCBI ID WP_009901015.1
RefSeq NC_007650
Uniprot ID Q2T404_BURTA, A0A135H649_BURTH
KEGG ID btha:DR62_4357, bte:BTH_II1901
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.5e-53 13..158
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-183 MVRQKDGQKFIGESRAPRVQIEYDVEVYGSQKKVELPFVAGVMADLSGDNTEPLGPVEDRRFQEVDVENFDERMAQIAPSLSYHVKNVLTNDGTLIPIDLTFTSMESFEPAAVVKRIPELSTLLEARNRLKELLTYMDGKAAAEDVIQELLKSPQWANEADAAPEQSGGAGEGADHQPEEGAK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9890 - -


  Protein sequence: 184 a.a.    

>T6CP001083 NC_007650:c2307591-2307040 [Burkholderia thailandensis E264] [TssB]
MVRQKDGQKFIGESRAPRVQIEYDVEVYGSQKKVELPFVAGVMADLSGDNTEPLGPVEDRRFQEVDVENFDERMAQIAPS
LSYHVKNVLTNDGTLIPIDLTFTSMESFEPAAVVKRIPELSTLLEARNRLKELLTYMDGKAAAEDVIQELLKSPQWANEA
DAAPEQSGGAGEGADHQPEEGAK*

  Nucleotide sequence: 552 bp    

>T6CP001083 NC_007650:c2307591-2307040 [Burkholderia thailandensis E264] [TssB]
ATGGTTCGACAAAAGGATGGACAGAAATTCATCGGGGAGAGTCGTGCGCCCCGCGTGCAGATTGAATACGACGTCGAGGT
GTACGGATCGCAGAAGAAGGTCGAACTGCCGTTCGTCGCGGGCGTGATGGCGGACCTGTCGGGCGACAACACCGAGCCGC
TCGGCCCCGTCGAGGATCGCCGCTTCCAGGAGGTCGACGTCGAGAACTTCGACGAGCGGATGGCGCAGATCGCGCCGTCG
CTCAGCTATCACGTGAAGAACGTGCTCACCAACGACGGCACGCTGATTCCGATCGATCTCACGTTTACGTCGATGGAATC
GTTCGAGCCCGCGGCTGTCGTCAAGCGCATTCCCGAGCTATCGACGCTGCTCGAGGCGCGCAACCGTCTGAAGGAATTGC
TGACCTACATGGACGGCAAGGCGGCGGCCGAGGACGTGATTCAGGAATTGCTGAAGAGCCCGCAGTGGGCAAACGAGGCC
GACGCGGCGCCGGAGCAATCCGGCGGTGCCGGTGAAGGCGCAGACCACCAACCGGAAGAGGGTGCGAAATGA