Detailed information of component protein


Summary

Component ID T6CP001048
Component protein type TssH
T6SS ID (Type) T6SS00111 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (882 a.a.); Nucleotide sequence (2646 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS00715
Coordinate (Strand) 166968..169613 (+)
NCBI ID WP_009907099.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.9e-36 608..773
AAA_lid_9 PF17871.3 3.5e-28 372..462
ClpB_D2-small PF10431.11 1.1e-12 780..853
AAA PF00004.31 1.9e-11 232..363
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-881 MTVSRQALFGKLGHSLFRSIESATAFCKLRGNPYVELVHWLHQMLQAADGDIQRIARHCDIDIGELDRDMVRALDELPAGASSISDFSHHIETAIERAWVLATLDFGDRRIRGAWLLAALLKTPELRRVLLSISSAFGRIRVDELDAMLPAWIDGSPEANETPYDNSDFGAATPGEASSALQQKGGGSPLEQFCLDLTARARAGQIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVGKTAVVEGLARAIADGDVPPKLADVRLLSLDVGALLAGASMKGEFEARLKGVLEAATKATQPVILFVDEIHTLIGAGGQAGTGDAANLLKPALARGTLRTIGATTWAEYKRHIEKDPALTRRFQVLQVPEPDEAAAIDMVRGLTRTFSRHHGVVVLDEAIRAAVKLSHRYIPSRQLPDKAISLLDTACARVALSQHAPPRELQDVRRRLEAARVRLELLDGEQRIGLGDESALAQSRDEIAALEVQEQAIDACWRQQIEAAQALLSAREAAGDDPATAIDALRELERALSSLQGDCAFVFPEVNEAIVAEIMSDWTGIPVGRMVTDEVSAVRALPDTLAARVIGQRDALHQICDRVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQNLITINMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEMFFQVFDKGYMEDGDGRYIDFRNTTILLTSNAGSELVSGLCTDEACAPDADGLCAALAPALLKTFPAAFLGRVTLVPYRPLAQETLSRIVRLHLDRVVARMAENQAVALSYSDNVVDYVVGRCLVQETGARLLIGFIEQHVLPLLAKCWLDSLSSKTVFTRVDLDVADSGAAPAQAFVLRAS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9391 - -


  Protein sequence: 882 a.a.    

>T6CP001048 NC_007650:166968-169613 [Burkholderia thailandensis E264] [TssH]
MTVSRQALFGKLGHSLFRSIESATAFCKLRGNPYVELVHWLHQMLQAADGDIQRIARHCDIDIGELDRDMVRALDELPAG
ASSISDFSHHIETAIERAWVLATLDFGDRRIRGAWLLAALLKTPELRRVLLSISSAFGRIRVDELDAMLPAWIDGSPEAN
ETPYDNSDFGAATPGEASSALQQKGGGSPLEQFCLDLTARARAGQIDPVVGRELEIRTMIDVLLRRRQNNPLLTGEAGVG
KTAVVEGLARAIADGDVPPKLADVRLLSLDVGALLAGASMKGEFEARLKGVLEAATKATQPVILFVDEIHTLIGAGGQAG
TGDAANLLKPALARGTLRTIGATTWAEYKRHIEKDPALTRRFQVLQVPEPDEAAAIDMVRGLTRTFSRHHGVVVLDEAIR
AAVKLSHRYIPSRQLPDKAISLLDTACARVALSQHAPPRELQDVRRRLEAARVRLELLDGEQRIGLGDESALAQSRDEIA
ALEVQEQAIDACWRQQIEAAQALLSAREAAGDDPATAIDALRELERALSSLQGDCAFVFPEVNEAIVAEIMSDWTGIPVG
RMVTDEVSAVRALPDTLAARVIGQRDALHQICDRVQTARAGLTDPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQNL
ITINMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEMFFQVFDKGYMEDGDGRYIDF
RNTTILLTSNAGSELVSGLCTDEACAPDADGLCAALAPALLKTFPAAFLGRVTLVPYRPLAQETLSRIVRLHLDRVVARM
AENQAVALSYSDNVVDYVVGRCLVQETGARLLIGFIEQHVLPLLAKCWLDSLSSKTVFTRVDLDVADSGAAPAQAFVLRA
S*

  Nucleotide sequence: 2646 bp    

>T6CP001048 NC_007650:166968-169613 [Burkholderia thailandensis E264] [TssH]
ATGACAGTTTCAAGACAGGCACTATTCGGCAAGCTCGGCCACTCGCTGTTTCGCAGCATCGAGTCGGCGACGGCGTTCTG
CAAGCTTCGCGGCAACCCCTACGTCGAACTGGTGCATTGGCTGCATCAGATGCTTCAGGCCGCTGACGGCGATATCCAGC
GGATCGCTCGTCACTGCGATATCGACATCGGCGAACTGGATCGCGACATGGTGCGCGCGCTCGATGAGTTGCCGGCGGGC
GCGAGCTCGATCAGCGATTTCTCGCACCATATCGAGACGGCGATCGAGCGCGCGTGGGTGCTGGCGACACTGGACTTCGG
CGATCGTCGGATTCGGGGCGCGTGGCTGTTGGCTGCGTTGCTGAAAACGCCGGAGCTCAGGCGCGTATTGCTGTCGATTT
CGTCCGCGTTCGGCCGGATTCGCGTCGACGAGCTCGACGCGATGTTGCCGGCGTGGATCGATGGCTCGCCCGAGGCGAAC
GAGACGCCGTACGACAACAGCGACTTCGGCGCCGCCACACCGGGCGAGGCATCGAGCGCGCTGCAGCAGAAGGGGGGCGG
TTCGCCGCTGGAGCAGTTCTGCCTCGACCTCACCGCGCGGGCGCGAGCGGGGCAGATCGATCCGGTGGTCGGTCGCGAGC
TGGAAATCCGGACGATGATCGACGTCCTGCTGCGCCGCCGCCAGAACAATCCGCTGCTCACGGGCGAGGCGGGTGTGGGC
AAGACGGCCGTCGTCGAAGGGCTCGCGCGTGCGATCGCCGATGGCGATGTGCCGCCGAAGCTTGCCGATGTGCGCCTGCT
GAGCCTCGATGTCGGCGCGCTGCTGGCCGGGGCGAGCATGAAGGGCGAATTCGAGGCGCGCCTGAAAGGCGTGCTGGAAG
CGGCGACGAAAGCGACGCAGCCCGTCATTCTGTTTGTCGACGAGATCCACACGCTGATCGGCGCGGGCGGCCAGGCGGGC
ACCGGAGATGCCGCGAACCTGCTCAAGCCCGCGCTCGCGCGCGGCACGCTTCGAACGATCGGTGCGACGACGTGGGCGGA
ATACAAGCGGCACATCGAAAAAGATCCGGCGCTCACACGCCGCTTCCAGGTGTTGCAGGTGCCCGAGCCCGATGAGGCGG
CCGCGATCGACATGGTGCGCGGGCTGACGCGCACCTTCTCGCGTCATCACGGCGTCGTCGTGCTGGACGAGGCGATTCGC
GCGGCGGTCAAGCTGTCGCATCGCTACATTCCATCCCGTCAGTTGCCGGACAAGGCGATCAGCTTGCTCGATACGGCGTG
CGCGCGCGTCGCGTTGTCGCAACATGCGCCGCCGCGTGAGTTGCAGGACGTCCGTAGAAGATTGGAAGCGGCGAGGGTGC
GGCTCGAACTGCTCGACGGCGAGCAGCGCATTGGCCTCGGCGACGAAAGCGCGCTCGCGCAGTCTCGCGACGAAATCGCC
GCGCTCGAAGTGCAAGAGCAAGCGATCGATGCGTGCTGGCGGCAGCAGATCGAGGCGGCGCAGGCGCTGCTCAGCGCGCG
CGAAGCGGCGGGCGACGATCCGGCAACGGCGATCGACGCGCTGCGCGAGCTGGAGCGAGCGCTGTCGAGCTTGCAAGGCG
ATTGCGCATTCGTCTTCCCCGAGGTCAACGAAGCGATCGTCGCCGAGATCATGTCCGACTGGACCGGCATTCCGGTGGGC
AGGATGGTGACGGACGAAGTGTCCGCCGTGCGTGCATTGCCGGATACGCTGGCCGCCCGGGTGATCGGTCAACGCGATGC
GCTGCATCAGATTTGCGATCGGGTGCAAACGGCGCGCGCCGGATTGACGGACCCGAAGAAGCCGCTCGGCGTGTTTCTGC
TCGCGGGGCCGTCGGGCGTCGGCAAGACGGAGACAGCGTTGGCGCTTGCCGAAGCGCTGTACGGCGGCGAGCAGAATCTC
ATCACGATCAACATGAGCGAGTATCAGGAGGCGCATACGGTATCGGGGCTGAAGGGCGCGCCGCCGGGTTACGTCGGATA
CGGCGAGGGCGGCGTGCTGACCGAGGCTGTGCGCCGGCGTCCGTATTCCGTCGTGCTCCTCGACGAGATCGAGAAGGCGC
ATCCCGACGTCCACGAAATGTTCTTCCAGGTATTCGACAAGGGCTACATGGAGGACGGCGACGGTCGCTATATCGATTTT
CGCAACACGACGATTCTTCTCACCAGCAACGCAGGCTCCGAACTCGTGTCCGGACTGTGCACGGACGAGGCTTGCGCGCC
CGACGCGGATGGCCTTTGCGCCGCGCTCGCTCCGGCATTGCTCAAGACGTTTCCCGCCGCGTTTCTCGGGCGCGTGACGC
TGGTGCCCTATCGTCCGCTGGCGCAAGAAACGCTATCGCGCATCGTCAGGCTGCATCTCGATCGAGTGGTGGCCCGAATG
GCCGAGAATCAGGCGGTCGCACTGAGCTATTCGGACAATGTCGTCGATTACGTCGTCGGTCGCTGTCTCGTCCAGGAAAC
GGGCGCGCGCCTGCTGATCGGCTTCATCGAGCAGCATGTGCTGCCGCTGCTCGCGAAGTGCTGGCTGGATTCGCTTTCGT
CCAAGACCGTGTTCACGCGGGTCGATCTCGACGTTGCCGATTCCGGCGCGGCTCCCGCGCAAGCGTTTGTCCTGCGCGCT
TCTTGA