Detailed information of component protein
Summary
External database links
Locus tag (Gene) | BTH_RS00700 |
Coordinate (Strand) | 164085..164603 (-) |
NCBI ID | WP_009894757.1 |
RefSeq | NC_007650 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 1.2e-19 | 41..144 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-172 | MRHPEGRHRAAYLPSLLDRLQDDAPHSFSESPDAYAPSADEMRRIVQRDLSLLLNTSNLDDEVDAGRYPLVAASVVNYGVPPLSGSYLHDPNRETIDRLVRTAIVHFEPRLIADSLAIRPLAAQQGASYNKLTFEISALVQWSPYPLELRIQSTFDLELNRVTLDKTTLNGK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9886 | - | - |
Protein sequence: 173 a.a.
>T6CP001047 NC_007650:c164603-164085 [Burkholderia thailandensis E264] [TssE]
MRHPEGRHRAAYLPSLLDRLQDDAPHSFSESPDAYAPSADEMRRIVQRDLSLLLNTSNLDDEVDAGRYPLVAASVVNYGV
PPLSGSYLHDPNRETIDRLVRTAIVHFEPRLIADSLAIRPLAAQQGASYNKLTFEISALVQWSPYPLELRIQSTFDLELN
RVTLDKTTLNGK*
MRHPEGRHRAAYLPSLLDRLQDDAPHSFSESPDAYAPSADEMRRIVQRDLSLLLNTSNLDDEVDAGRYPLVAASVVNYGV
PPLSGSYLHDPNRETIDRLVRTAIVHFEPRLIADSLAIRPLAAQQGASYNKLTFEISALVQWSPYPLELRIQSTFDLELN
RVTLDKTTLNGK*
Nucleotide sequence: 519 bp
>T6CP001047 NC_007650:c164603-164085 [Burkholderia thailandensis E264] [TssE]
ATGCGGCATCCTGAAGGACGGCATCGGGCCGCCTACCTTCCGTCGCTGCTCGACCGGCTGCAAGACGACGCGCCGCATTC
CTTCAGCGAATCGCCCGACGCCTATGCGCCAAGCGCCGACGAGATGCGTCGCATCGTCCAGCGGGATCTGAGCCTGCTGC
TCAACACGAGCAATCTGGACGACGAAGTGGATGCCGGCCGCTATCCGCTCGTTGCGGCCTCCGTCGTCAACTATGGCGTG
CCGCCGTTGTCGGGCAGCTACCTGCACGACCCAAACCGGGAAACGATCGATCGCCTCGTGCGCACCGCGATCGTTCATTT
CGAGCCGCGACTCATTGCGGACTCCTTGGCGATCAGGCCGCTCGCGGCGCAACAGGGCGCCAGCTACAACAAACTGACGT
TCGAAATCAGCGCGCTCGTGCAATGGTCGCCGTATCCGCTGGAGTTGCGCATCCAGAGCACGTTCGACCTCGAGTTGAAT
CGAGTCACGCTCGACAAGACAACGCTCAACGGAAAATGA
ATGCGGCATCCTGAAGGACGGCATCGGGCCGCCTACCTTCCGTCGCTGCTCGACCGGCTGCAAGACGACGCGCCGCATTC
CTTCAGCGAATCGCCCGACGCCTATGCGCCAAGCGCCGACGAGATGCGTCGCATCGTCCAGCGGGATCTGAGCCTGCTGC
TCAACACGAGCAATCTGGACGACGAAGTGGATGCCGGCCGCTATCCGCTCGTTGCGGCCTCCGTCGTCAACTATGGCGTG
CCGCCGTTGTCGGGCAGCTACCTGCACGACCCAAACCGGGAAACGATCGATCGCCTCGTGCGCACCGCGATCGTTCATTT
CGAGCCGCGACTCATTGCGGACTCCTTGGCGATCAGGCCGCTCGCGGCGCAACAGGGCGCCAGCTACAACAAACTGACGT
TCGAAATCAGCGCGCTCGTGCAATGGTCGCCGTATCCGCTGGAGTTGCGCATCCAGAGCACGTTCGACCTCGAGTTGAAT
CGAGTCACGCTCGACAAGACAACGCTCAACGGAAAATGA