Detailed information of component protein


Summary

Component ID T6CP001046
Component protein type TssF
T6SS ID (Type) T6SS00111 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (627 a.a.); Nucleotide sequence (1881 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS00695
Coordinate (Strand) 162203..164083 (-)
NCBI ID WP_009894755.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 6e-224 1..623
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-626 MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSARTQLKLEAEFPRFTQRLLEVTYPNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSIPPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQRSLLPHTKLRGALRLRVRTVGEIKFSQIAGLDRLSLYIGGDERIASHLFELIHASSVASVVRAQGAARGEGVVVAKNAVDFEGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLDRLPDELVTHVEAARFLLFCAPIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSVSRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPRTTSTNARKYGTRTPYVGTEVYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPPSAPREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDSLVGARTEPVVRRLPGHGLLVYGRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINVFTETELRSMQRGLVTRWKPRMGGRGAV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9925 - -


  Protein sequence: 627 a.a.    

>T6CP001046 NC_007650:c164083-162203 [Burkholderia thailandensis E264] [TssF]
MDPQFLDHYNRELTYMRELSAEFAAQHPKIARRLGMQGIEVADPYVERLIEAFCFMSARTQLKLEAEFPRFTQRLLEVTY
PNYVAPTPSMAVARLRPSLREGDFSKGFKVPRHSMLRSSIPPGEQTACEFRTGQDITLWPIEIAGATLTAVPPDLPDLQR
SLLPHTKLRGALRLRVRTVGEIKFSQIAGLDRLSLYIGGDERIASHLFELIHASSVASVVRAQGAARGEGVVVAKNAVDF
EGLSPDQSLLPLVWNTFHGHNLLHEYFTCRQRFYFFALTQLNAGLSRIDGKEAEIVLLLDRLPDELVTHVEAARFLLFCA
PIVNLFPKRTDRVEINRAQTAFHLIPDRTRPLDYEVFSVSRVFGQKAETSTEVTFNPLYQTLHSDIGNYGRYFSILREPR
TTSTNARKYGTRTPYVGTEVYVSLVDQAEAPYADDIRYLSVDAWVTNRDLPRLIPRNGVNDLTMQDSVPIEGVSLVHPPS
APREPYATGETAWRLIRQLSFNYMPLAELDHRDGGQALRNMLRLFVGTSEREQATQIDSLVGARTEPVVRRLPGHGLLVY
GRGVRCELTVDESGFSGLSPYLFGLVLEQYLTRHVSINVFTETELRSMQRGLVTRWKPRMGGRGAV*

  Nucleotide sequence: 1881 bp    

>T6CP001046 NC_007650:c164083-162203 [Burkholderia thailandensis E264] [TssF]
ATGGACCCGCAGTTTCTCGACCATTACAACCGCGAATTGACCTACATGCGGGAGTTGTCTGCGGAATTCGCGGCGCAGCA
CCCGAAGATCGCGCGCCGGCTCGGCATGCAAGGCATCGAAGTGGCGGACCCCTACGTGGAACGGCTCATCGAGGCGTTCT
GCTTCATGTCCGCACGCACTCAACTCAAGCTCGAGGCCGAGTTTCCCCGCTTCACGCAACGCCTGCTCGAAGTCACCTAT
CCGAATTACGTCGCGCCGACGCCGTCGATGGCCGTCGCGCGCCTGCGTCCAAGCCTGCGGGAAGGCGATTTCAGCAAGGG
GTTCAAGGTTCCCCGTCACAGCATGCTGCGCTCGTCGATCCCGCCCGGCGAGCAGACCGCGTGCGAATTCCGCACCGGCC
AGGACATCACGCTCTGGCCCATCGAGATCGCCGGCGCGACGCTGACCGCCGTGCCGCCCGATCTTCCCGATCTTCAGCGC
AGCCTGCTGCCGCACACGAAGCTGCGCGGCGCGCTCCGGCTGCGCGTGCGCACCGTCGGCGAAATCAAGTTCTCGCAAAT
TGCCGGACTCGATCGCCTCTCGCTGTATATCGGCGGCGACGAACGCATCGCCTCCCATCTCTTCGAACTGATTCACGCAA
GCAGCGTCGCGTCGGTCGTGCGCGCGCAGGGCGCCGCGCGCGGCGAAGGCGTCGTCGTTGCGAAGAACGCGGTCGATTTC
GAAGGCTTATCGCCCGATCAAAGCTTGTTGCCGCTCGTATGGAACACGTTCCATGGGCACAATCTGCTGCACGAATACTT
CACCTGCCGCCAACGCTTCTATTTCTTCGCGCTGACGCAATTGAACGCCGGCTTGTCGCGCATCGACGGAAAGGAAGCCG
AAATCGTGCTGTTGCTCGACCGCTTGCCCGACGAACTCGTCACGCACGTCGAGGCCGCGCGGTTTCTGCTGTTTTGCGCC
CCCATCGTCAATCTGTTCCCGAAGCGGACCGACCGAGTGGAAATCAATCGCGCCCAAACCGCGTTCCACCTGATACCGGA
CCGCACCCGCCCGCTCGATTACGAAGTGTTCTCGGTATCGCGCGTGTTCGGGCAAAAAGCCGAAACGTCGACGGAAGTCA
CCTTCAACCCGCTCTATCAGACGCTGCATAGCGACATCGGAAATTACGGCCGGTATTTCTCGATTCTGCGCGAACCGAGA
ACGACGTCGACCAACGCGCGCAAGTATGGAACGCGCACGCCATACGTCGGAACGGAAGTCTACGTGTCGCTCGTCGACCA
GGCCGAAGCGCCGTACGCCGACGACATTCGTTACCTGTCCGTCGACGCGTGGGTCACCAACCGCGATCTTCCCCGACTGA
TCCCGCGCAACGGCGTCAACGATCTGACGATGCAAGACTCCGTGCCGATCGAAGGCGTGAGCCTGGTTCATCCGCCGAGC
GCGCCGCGCGAGCCATACGCGACAGGTGAAACCGCGTGGCGCCTGATTCGCCAGCTCAGCTTCAACTACATGCCGCTTGC
CGAGCTCGATCACCGCGACGGCGGCCAGGCGTTGCGCAACATGCTGCGCCTGTTCGTCGGCACGAGCGAACGCGAACAGG
CCACGCAGATCGACAGCCTGGTCGGCGCGCGCACGGAGCCGGTCGTCCGGCGTCTGCCGGGTCACGGGCTCTTGGTTTAC
GGACGCGGCGTTCGATGCGAACTGACCGTCGACGAAAGCGGCTTCTCGGGGTTGAGCCCATACCTGTTCGGTCTCGTGCT
CGAGCAGTACCTCACGCGCCATGTCTCGATCAATGTCTTCACCGAGACCGAGCTTCGCTCGATGCAACGCGGCCTCGTCA
CGCGATGGAAGCCGCGAATGGGCGGAAGGGGCGCGGTATGA