Detailed information of component protein
Summary
External database links
Locus tag (Gene) | BTH_RS00690 |
Coordinate (Strand) | 161157..162206 (-) |
NCBI ID | WP_009894753.1 |
RefSeq | NC_007650 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssG | PF06996.13 | 3.6e-96 | 30..329 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-349 | MTAHPPATPPIDARSPLHPDALRAWFDPQAPWRAGFLSLLRAIAARDARMPLPGTACLPREEPFRIGQRPSMAFAPREIASLDVQRGRLDIQLFGLGLWGPQGPLPLHMTELAYNRAESYQDHAIAHFSNLFHHRALALFYRAWASSQATVSLDRADRETFSFYIGSLMGTDPEEAARTHPPTHARYAACAHLVREARNPDGVAATLSHYFGVPISVDEYVFHWIRIAEPERCLLGARAASTVMGEGALLGDMVPDCQHKFRLVIGPLDLDQYLRLTPHGNDLPTLVDWVRAFIGHEYDWEIKLLVKPRAAPPARADTAHRLGYSTWLGESRDDKPVVGMVFEPEKYCS |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9532 | - | - |
Protein sequence: 350 a.a.
>T6CP001045 NC_007650:c162206-161157 [Burkholderia thailandensis E264] [TssG]
MTAHPPATPPIDARSPLHPDALRAWFDPQAPWRAGFLSLLRAIAARDARMPLPGTACLPREEPFRIGQRPSMAFAPREIA
SLDVQRGRLDIQLFGLGLWGPQGPLPLHMTELAYNRAESYQDHAIAHFSNLFHHRALALFYRAWASSQATVSLDRADRET
FSFYIGSLMGTDPEEAARTHPPTHARYAACAHLVREARNPDGVAATLSHYFGVPISVDEYVFHWIRIAEPERCLLGARAA
STVMGEGALLGDMVPDCQHKFRLVIGPLDLDQYLRLTPHGNDLPTLVDWVRAFIGHEYDWEIKLLVKPRAAPPARADTAH
RLGYSTWLGESRDDKPVVGMVFEPEKYCS*
MTAHPPATPPIDARSPLHPDALRAWFDPQAPWRAGFLSLLRAIAARDARMPLPGTACLPREEPFRIGQRPSMAFAPREIA
SLDVQRGRLDIQLFGLGLWGPQGPLPLHMTELAYNRAESYQDHAIAHFSNLFHHRALALFYRAWASSQATVSLDRADRET
FSFYIGSLMGTDPEEAARTHPPTHARYAACAHLVREARNPDGVAATLSHYFGVPISVDEYVFHWIRIAEPERCLLGARAA
STVMGEGALLGDMVPDCQHKFRLVIGPLDLDQYLRLTPHGNDLPTLVDWVRAFIGHEYDWEIKLLVKPRAAPPARADTAH
RLGYSTWLGESRDDKPVVGMVFEPEKYCS*
Nucleotide sequence: 1050 bp
>T6CP001045 NC_007650:c162206-161157 [Burkholderia thailandensis E264] [TssG]
ATGACGGCTCATCCGCCCGCCACCCCGCCCATCGACGCCCGCTCGCCGCTGCATCCGGACGCACTGCGCGCATGGTTCGA
TCCGCAAGCGCCGTGGCGCGCCGGCTTCCTGAGCTTGTTGCGCGCAATCGCCGCACGCGATGCGCGCATGCCTCTGCCGG
GCACCGCGTGTCTTCCGAGGGAAGAGCCGTTTCGCATCGGACAACGTCCGTCGATGGCCTTCGCGCCGCGCGAGATCGCA
TCGCTCGACGTGCAGCGCGGGCGTCTCGACATTCAGCTGTTCGGTCTCGGCCTATGGGGGCCGCAAGGGCCGTTGCCGCT
TCACATGACCGAGCTCGCGTATAACCGCGCGGAGAGCTATCAGGATCACGCGATCGCGCATTTCTCCAATCTCTTTCATC
ACCGCGCGCTCGCGTTGTTCTATCGCGCGTGGGCGTCGTCACAAGCAACCGTATCGCTCGACCGCGCAGACCGCGAAACG
TTCTCGTTCTACATCGGCAGCCTGATGGGCACCGATCCAGAGGAAGCCGCGCGCACGCACCCGCCCACACACGCGCGATA
CGCCGCGTGCGCGCATCTCGTGCGCGAGGCGCGCAATCCGGACGGCGTGGCCGCTACGCTGTCTCATTACTTCGGCGTGC
CGATCTCCGTCGACGAGTACGTCTTCCACTGGATTCGGATTGCGGAGCCGGAGCGTTGCCTGCTCGGCGCGCGCGCCGCG
TCGACCGTCATGGGCGAGGGCGCGCTGCTCGGCGACATGGTTCCCGATTGTCAGCACAAGTTCCGGCTGGTCATCGGTCC
GCTCGATCTCGACCAGTATCTTCGCCTGACGCCGCACGGCAACGATCTGCCCACGCTGGTCGATTGGGTGCGCGCTTTCA
TCGGCCACGAATACGACTGGGAGATCAAGCTGCTCGTCAAGCCGCGCGCCGCACCGCCCGCCCGCGCGGACACCGCGCAC
CGTCTCGGCTATTCGACCTGGCTCGGGGAATCGAGGGACGACAAGCCGGTCGTCGGCATGGTGTTCGAGCCTGAAAAATA
CTGTTCCTGA
ATGACGGCTCATCCGCCCGCCACCCCGCCCATCGACGCCCGCTCGCCGCTGCATCCGGACGCACTGCGCGCATGGTTCGA
TCCGCAAGCGCCGTGGCGCGCCGGCTTCCTGAGCTTGTTGCGCGCAATCGCCGCACGCGATGCGCGCATGCCTCTGCCGG
GCACCGCGTGTCTTCCGAGGGAAGAGCCGTTTCGCATCGGACAACGTCCGTCGATGGCCTTCGCGCCGCGCGAGATCGCA
TCGCTCGACGTGCAGCGCGGGCGTCTCGACATTCAGCTGTTCGGTCTCGGCCTATGGGGGCCGCAAGGGCCGTTGCCGCT
TCACATGACCGAGCTCGCGTATAACCGCGCGGAGAGCTATCAGGATCACGCGATCGCGCATTTCTCCAATCTCTTTCATC
ACCGCGCGCTCGCGTTGTTCTATCGCGCGTGGGCGTCGTCACAAGCAACCGTATCGCTCGACCGCGCAGACCGCGAAACG
TTCTCGTTCTACATCGGCAGCCTGATGGGCACCGATCCAGAGGAAGCCGCGCGCACGCACCCGCCCACACACGCGCGATA
CGCCGCGTGCGCGCATCTCGTGCGCGAGGCGCGCAATCCGGACGGCGTGGCCGCTACGCTGTCTCATTACTTCGGCGTGC
CGATCTCCGTCGACGAGTACGTCTTCCACTGGATTCGGATTGCGGAGCCGGAGCGTTGCCTGCTCGGCGCGCGCGCCGCG
TCGACCGTCATGGGCGAGGGCGCGCTGCTCGGCGACATGGTTCCCGATTGTCAGCACAAGTTCCGGCTGGTCATCGGTCC
GCTCGATCTCGACCAGTATCTTCGCCTGACGCCGCACGGCAACGATCTGCCCACGCTGGTCGATTGGGTGCGCGCTTTCA
TCGGCCACGAATACGACTGGGAGATCAAGCTGCTCGTCAAGCCGCGCGCCGCACCGCCCGCCCGCGCGGACACCGCGCAC
CGTCTCGGCTATTCGACCTGGCTCGGGGAATCGAGGGACGACAAGCCGGTCGTCGGCATGGTGTTCGAGCCTGAAAAATA
CTGTTCCTGA