Detailed information of component protein


Summary

Component ID T6CP001043
Component protein type TssI
T6SS ID (Type) T6SS00111 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (873 a.a.); Nucleotide sequence (2619 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS00660
Coordinate (Strand) 151273..153891 (+)
NCBI ID WP_011400805.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2e-92 41..368
Phage_base_V PF04717.14 2.6e-13 425..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-872 MPNHFSNGRTNQSRTVVIRSGAMPRLLGQPALKFLSLRGEEHLGKLYTYELLLRTPDDFHVPLATSANLDLKAMIGTEMTVGIQLDGIGTGAQGGVGAGAREISGLVVKAGFLRSEGRYNVYRIELRPWLWLATLTSDYKIFQDKSVVEIIDTVLHDYPYPVEKRLDIDKYSVAGESARNEPRAFQVQYGETDFDFVQRLMEEWGIYWFFEHSDNKHRLVLCDHIGGHRKAPSEAYHEIAHHPEGGKIDIEYINYFSTDEALRPGRVVIDDFDFTRPLASLVTSNHQPRETNWGEGELFEWPGDYTDSKHGDLISRVRMEERRATGSRAYGRGNVRGLACGHTFVLAKHKHDDANREYLVIESALMLTEVADETGSGYRYECDNELVVQPSNEVFRMPRETPKPTTNGPQSAIVVGPPGHEVWTDEFGRVKIRFLWDRYARNDATDSCWVRVSQAWAGVNFGGIYIPRIGQEVIVGFMNGDPDRPLILGSLYNTITPPPWDLPGDATKSGFKSKSITGGRENYNGIRFEDKLGAEEFHMQAEKDMNRLTKNDESHTIGANYSIGVGITHTRAVGAMFSSIVGGAASYAVGGAESTMIGGAYALNVGGAHAVAVGGASSVSVGGAYARNVGGAYALTVGGVLSIVCGASSITMTACGSIKIVGKNIRIIGSDEVVVQGAPLQLNPGDSDCGGGGGGGGGGGAIPPIPLPSFFLDITKPILPPPPPPPTEVPPEPTPTPEPTPTPEPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTSSEI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9945 - -


  Protein sequence: 873 a.a.    

>T6CP001043 NC_007650:151273-153891 [Burkholderia thailandensis E264] [TssI]
MPNHFSNGRTNQSRTVVIRSGAMPRLLGQPALKFLSLRGEEHLGKLYTYELLLRTPDDFHVPLATSANLDLKAMIGTEMT
VGIQLDGIGTGAQGGVGAGAREISGLVVKAGFLRSEGRYNVYRIELRPWLWLATLTSDYKIFQDKSVVEIIDTVLHDYPY
PVEKRLDIDKYSVAGESARNEPRAFQVQYGETDFDFVQRLMEEWGIYWFFEHSDNKHRLVLCDHIGGHRKAPSEAYHEIA
HHPEGGKIDIEYINYFSTDEALRPGRVVIDDFDFTRPLASLVTSNHQPRETNWGEGELFEWPGDYTDSKHGDLISRVRME
ERRATGSRAYGRGNVRGLACGHTFVLAKHKHDDANREYLVIESALMLTEVADETGSGYRYECDNELVVQPSNEVFRMPRE
TPKPTTNGPQSAIVVGPPGHEVWTDEFGRVKIRFLWDRYARNDATDSCWVRVSQAWAGVNFGGIYIPRIGQEVIVGFMNG
DPDRPLILGSLYNTITPPPWDLPGDATKSGFKSKSITGGRENYNGIRFEDKLGAEEFHMQAEKDMNRLTKNDESHTIGAN
YSIGVGITHTRAVGAMFSSIVGGAASYAVGGAESTMIGGAYALNVGGAHAVAVGGASSVSVGGAYARNVGGAYALTVGGV
LSIVCGASSITMTACGSIKIVGKNIRIIGSDEVVVQGAPLQLNPGDSDCGGGGGGGGGGGAIPPIPLPSFFLDITKPILP
PPPPPPTEVPPEPTPTPEPTPTPEPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPT
PTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTSSEI*

  Nucleotide sequence: 2619 bp    

>T6CP001043 NC_007650:151273-153891 [Burkholderia thailandensis E264] [TssI]
ATGCCAAACCATTTTTCGAACGGACGGACGAATCAAAGCCGTACGGTAGTGATCCGCAGCGGTGCGATGCCGCGGCTGCT
TGGTCAGCCTGCGCTCAAGTTCCTGTCGCTGCGCGGTGAAGAGCACCTCGGAAAACTCTATACGTACGAACTGCTCCTGC
GCACGCCGGACGATTTCCATGTTCCGTTGGCGACGAGCGCGAATCTCGACCTGAAGGCGATGATCGGCACGGAGATGACT
GTCGGCATTCAGCTCGACGGAATCGGAACGGGCGCGCAAGGGGGCGTTGGCGCGGGCGCGCGCGAAATCAGCGGGCTCGT
GGTCAAGGCGGGCTTTCTTCGCAGCGAAGGGCGCTACAACGTCTATCGCATCGAGCTGCGCCCCTGGCTGTGGCTCGCGA
CTTTGACGAGCGACTACAAGATCTTCCAGGACAAGAGCGTCGTCGAAATCATCGACACGGTCTTGCACGATTACCCTTAC
CCGGTCGAGAAGCGGCTCGACATCGACAAATATTCGGTTGCGGGCGAGAGCGCTCGAAACGAGCCGCGCGCGTTCCAGGT
GCAATACGGCGAAACCGATTTCGACTTCGTTCAGCGCTTGATGGAGGAGTGGGGGATCTACTGGTTCTTCGAGCACTCGG
ACAACAAGCATCGCCTTGTCTTGTGCGATCACATCGGCGGACATCGCAAGGCGCCGAGCGAGGCCTATCACGAGATCGCG
CATCATCCCGAAGGCGGGAAGATCGACATCGAGTACATCAACTATTTTTCGACGGACGAAGCGCTGCGGCCGGGCCGCGT
CGTGATAGACGACTTCGATTTCACGCGTCCGCTCGCGAGCCTCGTCACGTCGAATCACCAGCCGCGGGAAACGAACTGGG
GAGAAGGCGAGCTGTTCGAATGGCCGGGCGACTACACCGATAGCAAGCACGGCGATCTCATTAGCCGTGTGCGCATGGAG
GAGCGCCGCGCTACGGGGTCGCGCGCATACGGTCGGGGCAACGTGCGCGGCCTCGCATGCGGCCATACGTTCGTGTTGGC
GAAGCACAAGCACGACGACGCCAACCGCGAGTATCTCGTCATCGAATCGGCGTTGATGCTGACCGAAGTCGCGGACGAAA
CGGGCAGCGGCTACCGCTACGAATGCGACAACGAGTTGGTCGTGCAGCCGTCGAACGAGGTGTTCCGGATGCCGCGCGAA
ACGCCGAAGCCGACGACGAACGGGCCACAGTCCGCGATCGTGGTCGGGCCGCCGGGCCACGAGGTATGGACCGACGAATT
CGGCCGCGTGAAGATCCGTTTTCTGTGGGATCGCTACGCACGCAATGACGCGACGGATTCCTGCTGGGTGCGCGTGAGCC
AGGCGTGGGCCGGCGTGAACTTCGGCGGCATCTACATTCCGCGGATCGGCCAGGAGGTGATCGTCGGATTCATGAACGGC
GACCCTGACCGTCCGCTGATTCTCGGCAGTCTCTACAACACCATTACGCCGCCGCCTTGGGATCTGCCCGGCGACGCGAC
GAAGAGCGGGTTCAAGAGCAAGTCGATCACGGGCGGGCGCGAGAACTACAACGGCATCCGCTTCGAGGACAAGCTGGGGG
CCGAGGAGTTTCACATGCAGGCGGAAAAGGACATGAACCGCCTGACGAAGAACGACGAGTCGCATACGATCGGCGCGAAT
TATTCGATCGGCGTCGGGATCACCCACACGCGAGCGGTGGGCGCCATGTTCAGCAGCATTGTCGGCGGAGCCGCCAGCTA
TGCGGTGGGCGGCGCGGAGTCGACGATGATCGGCGGTGCGTATGCGTTGAACGTCGGCGGTGCGCACGCGGTTGCGGTGG
GCGGCGCATCGTCCGTTTCCGTTGGCGGCGCATACGCGCGCAATGTCGGCGGCGCGTATGCGCTGACAGTGGGGGGCGTG
CTGTCGATCGTCTGCGGCGCGTCTTCGATCACCATGACGGCCTGCGGCTCGATCAAGATCGTCGGCAAGAATATTCGCAT
CATCGGCAGCGACGAAGTCGTCGTGCAAGGCGCGCCGCTGCAGCTGAATCCCGGCGATTCGGATTGCGGAGGCGGAGGCG
GCGGTGGCGGCGGTGGCGGCGCGATTCCGCCGATTCCGTTGCCGTCGTTCTTCCTCGATATTACGAAGCCGATCCTTCCG
CCGCCGCCGCCGCCACCGACGGAGGTGCCGCCGGAGCCGACGCCGACGCCGGAGCCGACGCCAACGCCGGAGCCAACGCC
AACGCCAACGCCGACGCCGACGCCGACGCCGACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCAA
CGCCAACGCCAACGCCAACGCCAACGCCAACGCCAACGCCGACGCCGACGCCGACGCCGACGCCAACGCCGACGCCGACG
CCGACGCCAACGCCAACGCCAACGCCGACGCCGACGCCGACGCCGACGCCGACGCCGACGCCGACGCCAACGCCAACGCC
GACGCCGACGCCAACGCCGACGCCGACGCCAACGCCGACGCCAACGCCAACGCCGACGCCGACGCCAACGCCAACGCCGA
CGCCGACGCCGACGCCGACGCCAACGCCAACGCCAACTCCGACCAGTTCCGAGATTTGA