Detailed information of component protein


Summary

Component ID T6CP001042
Component protein type TssM
T6SS ID (Type) T6SS00111 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (1303 a.a.); Nucleotide sequence (3909 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS00650
Coordinate (Strand) 146525..150433 (+)
NCBI ID WP_009894736.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 1.4e-88 265..538
IcmF-related PF06761.14 4e-76 591..912
IcmF_C PF06744.14 1.4e-24 1179..1281
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MSYLKR
Transmembrane helix 7-29 FFRFVFSWQMLACIAVLLVSVAV
Outside 30-43 WFVGPLLAFDELRP
Transmembrane helix 44-66 LAGVVVRVAVIVLLVALLAFWLM
Inside 67-72 RWPLSP
Transmembrane helix 73-91 VGVAALCLLIWHAGPLFAF
Outside 92-100 GDHRPFGPA
Transmembrane helix 101-123 WVRVLIVAVILFCYAVYGLYRLW
Inside 124-532 QAVRTNDALLRRILDPSAGKPDAAARADIRAVNVAVSKAIGQLKRLRGGAFGWRRLLESGRYLYELPWYMMVGAPGAGKTAAIARSGLKFPLADQMEASTERARGGTINCDWWFANEAVLIDTAGRYARHEVPGDEEATLANEAEWKGFLGLLRKHRPRAPVNGVVLSVSVEDLVGRTPAERTAHAAALRARLGELHQELGIHFPVYVIVTKLDLLPGFPEYFQSLTAEGRTQIWGFTLPYDAENRKSAVGALREHCADELKRLEMRIDAGLNNRLLEEYENDRRKRLYALPQEFRSLSEALTDMLGLVFLDSRYDDAQLQNTLRGVYFTSAEQTDQVMAADRETILQRLKRQLGRMLGGDAGAQTRGNGAMSGSRGYFLRDVFQHVIVPEAHLVRPNVMWEVRFRLMR
Transmembrane helix 533-552 WAGHLLAVALLVWLASSLTV
Outside 553-1302 SFDSNRGYLDAISDKTTALAARVNAYNKAPKPAGVAGVLDGSRDLPQYGNLDLEAPGASFRYGLYVAPGIVDASDATYRNLLRRSLLPQIVRRVENALSAQIDAKNADEVYRTLTIYLMLYDAARHDAKAVKDWVMRDWERSDSAAEMGGRNRMARHLDALFVDGQPFEPSGRQNAALVQRARLFLNANPAPRRLYERAMAAIEKEAPENFTLARAVGLQGAGIFRLVDGSRFQRGVPGLYTYEGYHQVFSARLPEFLARAQSDDAWVMGSADSAARWGDAIRNTKIVAGRSALADDIRRQYLTDYGNYWQQYLADIRPVSSGENGGSGTLAFDLATLRALAAPDSPLVRLARAVVRETSLSVVDAREDASLTDTALSAVGRRSGTAKEVADGAQKLAARRPEQRLEKELVDNRFAALREVVTGQADTGSGPAMTDMPISSGGKALQLDAILTLINEQYTRLVVADNALSSHSMPPALDIGTTLQMEAEKLPAPLRAVLGGIATQAADKVGREVGSLLAMQVDSSVGKACRAAVDGKYPFARSSQEVDIEDFNRLFAAGGLFDEFFQKALAAHVDTNSKPWRYKALNPGMPPIRGPSLEPFERAAAIREVFFREPGAKRMAWKMDAKVASIDPEITEFIVDVDGQSQRYVHGPVLPFSVNWPGPRGGAIAEITAKPRIRPDTSTITTTGPWALFRLIERGRLTGTTSASRLMLDFDFDGRRAALELRTNGQANPLTSGLLTNFRCPGSLG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9484 - -


  Protein sequence: 1303 a.a.    

>T6CP001042 NC_007650:146525-150433 [Burkholderia thailandensis E264] [TssM]
MSYLKRFFRFVFSWQMLACIAVLLVSVAVWFVGPLLAFDELRPLAGVVVRVAVIVLLVALLAFWLMRWPLSPVGVAALCL
LIWHAGPLFAFGDHRPFGPAWVRVLIVAVILFCYAVYGLYRLWQAVRTNDALLRRILDPSAGKPDAAARADIRAVNVAVS
KAIGQLKRLRGGAFGWRRLLESGRYLYELPWYMMVGAPGAGKTAAIARSGLKFPLADQMEASTERARGGTINCDWWFANE
AVLIDTAGRYARHEVPGDEEATLANEAEWKGFLGLLRKHRPRAPVNGVVLSVSVEDLVGRTPAERTAHAAALRARLGELH
QELGIHFPVYVIVTKLDLLPGFPEYFQSLTAEGRTQIWGFTLPYDAENRKSAVGALREHCADELKRLEMRIDAGLNNRLL
EEYENDRRKRLYALPQEFRSLSEALTDMLGLVFLDSRYDDAQLQNTLRGVYFTSAEQTDQVMAADRETILQRLKRQLGRM
LGGDAGAQTRGNGAMSGSRGYFLRDVFQHVIVPEAHLVRPNVMWEVRFRLMRWAGHLLAVALLVWLASSLTVSFDSNRGY
LDAISDKTTALAARVNAYNKAPKPAGVAGVLDGSRDLPQYGNLDLEAPGASFRYGLYVAPGIVDASDATYRNLLRRSLLP
QIVRRVENALSAQIDAKNADEVYRTLTIYLMLYDAARHDAKAVKDWVMRDWERSDSAAEMGGRNRMARHLDALFVDGQPF
EPSGRQNAALVQRARLFLNANPAPRRLYERAMAAIEKEAPENFTLARAVGLQGAGIFRLVDGSRFQRGVPGLYTYEGYHQ
VFSARLPEFLARAQSDDAWVMGSADSAARWGDAIRNTKIVAGRSALADDIRRQYLTDYGNYWQQYLADIRPVSSGENGGS
GTLAFDLATLRALAAPDSPLVRLARAVVRETSLSVVDAREDASLTDTALSAVGRRSGTAKEVADGAQKLAARRPEQRLEK
ELVDNRFAALREVVTGQADTGSGPAMTDMPISSGGKALQLDAILTLINEQYTRLVVADNALSSHSMPPALDIGTTLQMEA
EKLPAPLRAVLGGIATQAADKVGREVGSLLAMQVDSSVGKACRAAVDGKYPFARSSQEVDIEDFNRLFAAGGLFDEFFQK
ALAAHVDTNSKPWRYKALNPGMPPIRGPSLEPFERAAAIREVFFREPGAKRMAWKMDAKVASIDPEITEFIVDVDGQSQR
YVHGPVLPFSVNWPGPRGGAIAEITAKPRIRPDTSTITTTGPWALFRLIERGRLTGTTSASRLMLDFDFDGRRAALELRT
NGQANPLTSGLLTNFRCPGSLG*

  Nucleotide sequence: 3909 bp    

>T6CP001042 NC_007650:146525-150433 [Burkholderia thailandensis E264] [TssM]
ATGTCTTACCTGAAACGTTTCTTCAGATTCGTCTTTTCGTGGCAGATGCTCGCGTGCATCGCGGTGCTGCTCGTCTCCGT
CGCCGTATGGTTCGTCGGCCCCTTGCTCGCGTTCGACGAGTTGAGGCCGCTAGCGGGCGTCGTCGTGCGCGTCGCCGTCA
TCGTCCTTCTGGTGGCGCTCCTGGCGTTCTGGCTGATGCGCTGGCCGCTCAGCCCGGTCGGTGTCGCCGCGCTGTGTCTG
CTGATCTGGCACGCGGGGCCGCTCTTCGCGTTCGGCGATCACCGTCCGTTCGGACCTGCATGGGTTCGCGTGCTGATCGT
CGCCGTGATTCTGTTCTGCTACGCCGTCTATGGCCTCTATCGCCTGTGGCAGGCGGTGCGGACGAACGACGCATTGCTCA
GGCGCATTCTCGATCCGTCGGCGGGCAAGCCGGACGCGGCGGCGCGTGCGGACATCCGCGCGGTGAACGTGGCGGTGTCG
AAGGCGATCGGTCAGTTGAAGCGCTTGCGCGGCGGTGCATTCGGCTGGCGGCGCTTGCTCGAAAGCGGACGCTATCTGTA
CGAACTGCCGTGGTACATGATGGTCGGCGCGCCTGGTGCGGGCAAGACCGCGGCGATCGCGCGTTCCGGTCTGAAATTCC
CGCTCGCGGATCAAATGGAGGCATCGACCGAGCGCGCTCGGGGCGGCACGATCAATTGCGACTGGTGGTTCGCCAATGAG
GCCGTGTTGATCGATACGGCAGGCCGTTACGCTCGGCACGAGGTGCCCGGCGACGAAGAGGCGACGCTCGCCAACGAAGC
GGAGTGGAAGGGCTTTCTCGGCCTGCTTCGCAAACATCGGCCGCGCGCGCCGGTCAACGGTGTGGTCCTGTCGGTCAGCG
TCGAGGATCTCGTCGGACGGACGCCGGCCGAGCGCACCGCGCATGCGGCCGCGCTGCGCGCCCGCCTCGGCGAGCTGCAT
CAGGAACTGGGCATTCATTTTCCGGTATACGTGATCGTCACGAAGCTCGATTTGCTGCCGGGCTTTCCGGAGTATTTCCA
GTCGCTGACGGCTGAAGGGCGCACGCAGATCTGGGGATTTACGCTGCCCTACGACGCCGAGAACAGGAAGAGCGCGGTGG
GTGCCCTGCGCGAGCATTGCGCCGATGAACTGAAGCGGCTGGAGATGCGCATCGACGCCGGACTGAACAACCGCCTGCTC
GAAGAGTACGAAAACGATCGCCGCAAGAGGCTGTATGCGTTGCCGCAGGAGTTCCGGAGCCTGTCTGAGGCGTTGACGGA
CATGCTGGGCCTCGTGTTTCTCGATTCGCGCTACGACGACGCCCAGTTGCAGAACACGCTGCGCGGCGTCTATTTCACGA
GCGCCGAGCAGACGGATCAGGTGATGGCCGCCGATCGCGAAACCATCCTGCAGCGCTTGAAGCGCCAGCTCGGCAGAATG
CTTGGCGGCGACGCCGGGGCGCAGACGCGCGGTAACGGCGCGATGTCGGGCAGCCGCGGCTATTTCCTGCGCGATGTGTT
CCAGCACGTGATCGTGCCGGAGGCGCACCTGGTTCGGCCGAACGTCATGTGGGAAGTGCGCTTTCGCCTGATGCGCTGGG
CCGGACATCTGCTCGCCGTCGCGCTGCTGGTCTGGCTGGCGAGTTCGCTGACGGTGAGCTTCGACAGCAATCGCGGCTAT
CTCGATGCGATATCGGACAAGACGACCGCCCTCGCCGCGCGAGTCAACGCGTACAACAAGGCGCCGAAACCGGCAGGAGT
CGCGGGCGTGCTGGACGGCTCTCGCGATCTTCCCCAGTACGGAAATCTCGATCTCGAGGCGCCGGGCGCGAGCTTCCGCT
ACGGCCTGTATGTGGCGCCCGGCATCGTCGACGCGTCCGACGCGACCTATCGGAACCTGCTGCGCCGGAGCCTTCTGCCG
CAGATCGTGCGGCGTGTCGAGAATGCGCTGAGCGCGCAGATCGATGCGAAGAATGCGGACGAGGTCTATCGCACGCTGAC
GATCTACTTGATGCTCTACGACGCCGCGCGCCATGACGCGAAGGCGGTGAAGGACTGGGTCATGCGCGACTGGGAGCGCT
CGGACAGCGCGGCCGAGATGGGCGGACGCAATCGGATGGCGCGGCACCTGGACGCGCTGTTCGTCGACGGTCAGCCGTTC
GAGCCGAGCGGACGCCAGAACGCCGCGCTCGTTCAGCGCGCGCGGCTTTTCCTCAACGCGAATCCGGCGCCGAGGCGGCT
GTACGAGCGCGCGATGGCCGCGATCGAGAAAGAGGCGCCGGAGAACTTCACGCTCGCGCGCGCGGTCGGGCTTCAGGGCG
CGGGAATCTTCAGGCTCGTCGACGGTTCGCGATTTCAACGCGGCGTGCCGGGCTTGTATACGTACGAAGGCTACCATCAG
GTGTTCAGCGCTCGGCTGCCCGAATTTCTCGCCCGCGCGCAAAGCGACGATGCATGGGTGATGGGGAGCGCCGATTCCGC
CGCGCGATGGGGCGACGCGATCCGGAACACGAAGATCGTTGCAGGGCGCTCGGCGCTTGCCGACGACATTCGTCGCCAGT
ACCTGACGGATTACGGCAACTATTGGCAACAGTATCTGGCGGACATTCGGCCCGTCTCGTCCGGGGAAAACGGCGGGAGC
GGCACGCTCGCGTTCGACCTCGCGACGCTGCGCGCACTCGCCGCGCCCGATTCGCCGCTCGTGAGACTGGCGCGCGCCGT
CGTTCGCGAAACATCGTTGTCGGTCGTCGACGCAAGGGAAGACGCGTCGTTGACCGACACGGCGCTTTCGGCGGTCGGGC
GACGGTCCGGCACGGCGAAGGAGGTTGCCGACGGCGCGCAGAAACTGGCGGCGCGCAGGCCGGAGCAGCGCCTGGAGAAG
GAACTGGTGGATAACCGCTTCGCGGCGCTGCGCGAGGTGGTGACGGGGCAGGCCGATACGGGAAGCGGTCCCGCGATGAC
GGACATGCCGATCTCGTCGGGCGGCAAGGCGCTGCAGCTCGATGCAATTCTCACGCTGATCAACGAACAGTACACGCGTC
TCGTCGTCGCCGACAACGCCCTCTCGTCACACAGCATGCCGCCCGCGCTGGATATCGGCACCACATTGCAAATGGAGGCG
GAGAAATTGCCCGCGCCGCTGCGCGCCGTGCTGGGCGGCATCGCGACGCAAGCCGCCGACAAGGTCGGGCGCGAAGTGGG
TTCGCTGCTCGCGATGCAGGTGGACTCGAGTGTCGGCAAGGCGTGCCGCGCCGCCGTCGACGGCAAGTATCCGTTCGCGC
GGAGCAGCCAGGAGGTGGACATCGAGGATTTCAACCGCCTCTTCGCCGCGGGCGGGCTGTTCGACGAGTTCTTTCAGAAG
GCGCTTGCCGCGCATGTCGACACCAACTCGAAGCCGTGGCGCTACAAGGCGTTGAACCCCGGCATGCCGCCGATTCGGGG
GCCGAGCCTCGAGCCGTTCGAGCGCGCCGCCGCGATTCGCGAAGTGTTCTTTCGTGAGCCGGGCGCGAAGCGGATGGCGT
GGAAGATGGACGCGAAGGTGGCGTCCATCGATCCCGAGATCACCGAGTTCATCGTCGATGTCGACGGCCAGTCGCAGCGC
TATGTCCACGGTCCGGTGCTGCCGTTCTCCGTGAACTGGCCCGGGCCGCGCGGCGGCGCGATCGCGGAGATCACCGCGAA
GCCGCGGATTCGTCCCGATACGTCGACGATCACGACGACGGGGCCCTGGGCGCTGTTTCGCCTGATCGAGCGCGGGCGGC
TGACGGGCACCACGTCGGCGAGCCGGTTGATGCTGGATTTCGATTTCGACGGCCGGCGCGCGGCTCTGGAGCTCAGGACG
AACGGCCAGGCGAATCCGTTGACGAGCGGCTTGCTGACGAATTTTCGCTGCCCGGGGAGCCTCGGTTGA