Detailed information of component protein


Summary

Component ID T6CP001040
Component protein type TssK
T6SS ID (Type) T6SS00111 insolico (Type i3)
Strain Burkholderia thailandensis E264
Replicon chromosome II
Sequence Protein sequence (450 a.a.); Nucleotide sequence (1350 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BTH_RS00640
Coordinate (Strand) 143863..145212 (+)
NCBI ID WP_009894732.1
RefSeq NC_007650
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.3e-141 20..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-449 MSWHNKVVWNEGLFLLPQLFQQQERYFEYFAHKRAAVLSPFFWGFSRYEIDQESLSFGKLVFKSGTGIFSDGTPFDVPGHTPPPPPLTIASEHQDQVIYLAVPLRLPNTEETAFDEQAGSLARYSAFEIELRDSNAIGQGPKPVQLANMRLRLLPEKELTQSWIGIALTRVKTLHADGSVALHDGDHIPPVSQYGANPLLREWATQLHGLAKLRADALATRLSGSDGRAGAAAEVADYLLLQVLNRYEPLLEHICRIREMPPVTLYRELSMLAGELSTFVRPQTRRPRPTPGYDHAQLYASIRPLVDEVHYLLNQVLIRGAQPIPLTEQPHGIRVATMLPSELAGYSSLVLAVGAQMSPDVLQQQFASQTKISHPQRLPELIRSHLPGMTMIPLPVPPRQIPFNSSYIYYELSRTGPFWEQIAQQGGLAMHIAGHFPELKLELWGVRHK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9932 - -


  Protein sequence: 450 a.a.    

>T6CP001040 NC_007650:143863-145212 [Burkholderia thailandensis E264] [TssK]
MSWHNKVVWNEGLFLLPQLFQQQERYFEYFAHKRAAVLSPFFWGFSRYEIDQESLSFGKLVFKSGTGIFSDGTPFDVPGH
TPPPPPLTIASEHQDQVIYLAVPLRLPNTEETAFDEQAGSLARYSAFEIELRDSNAIGQGPKPVQLANMRLRLLPEKELT
QSWIGIALTRVKTLHADGSVALHDGDHIPPVSQYGANPLLREWATQLHGLAKLRADALATRLSGSDGRAGAAAEVADYLL
LQVLNRYEPLLEHICRIREMPPVTLYRELSMLAGELSTFVRPQTRRPRPTPGYDHAQLYASIRPLVDEVHYLLNQVLIRG
AQPIPLTEQPHGIRVATMLPSELAGYSSLVLAVGAQMSPDVLQQQFASQTKISHPQRLPELIRSHLPGMTMIPLPVPPRQ
IPFNSSYIYYELSRTGPFWEQIAQQGGLAMHIAGHFPELKLELWGVRHK*

  Nucleotide sequence: 1350 bp    

>T6CP001040 NC_007650:143863-145212 [Burkholderia thailandensis E264] [TssK]
ATGAGCTGGCATAACAAGGTGGTGTGGAACGAAGGGCTGTTTCTTCTTCCCCAGTTGTTTCAACAACAGGAACGTTACTT
CGAATACTTCGCGCACAAGCGGGCCGCTGTCCTCAGCCCGTTTTTCTGGGGATTCAGCCGATACGAAATCGATCAGGAGT
CGCTGTCGTTCGGCAAGCTCGTCTTCAAGAGCGGCACCGGAATATTTTCCGACGGCACGCCGTTCGATGTGCCGGGGCAC
ACGCCGCCGCCGCCGCCGCTGACGATTGCTTCGGAGCACCAGGATCAGGTGATCTATCTCGCGGTGCCGCTGCGTCTGCC
GAATACGGAGGAAACCGCGTTCGACGAACAAGCGGGATCGCTTGCGCGCTATTCGGCGTTCGAGATCGAATTGCGCGACA
GCAATGCGATCGGTCAAGGGCCCAAGCCGGTGCAGCTCGCGAACATGCGGCTGCGCCTGCTGCCCGAGAAGGAGCTGACG
CAATCCTGGATCGGCATTGCGCTGACGCGCGTGAAGACGCTTCACGCCGACGGCTCGGTTGCGCTGCACGACGGCGATCA
TATCCCGCCGGTCAGCCAATACGGGGCGAATCCGCTGCTGCGCGAATGGGCCACCCAGTTGCATGGTCTCGCGAAGCTGC
GCGCCGACGCGCTCGCGACACGCCTGTCCGGCAGCGATGGCCGCGCAGGCGCGGCGGCCGAGGTGGCGGATTATCTGTTG
CTGCAGGTGCTGAACCGGTATGAGCCGCTGCTCGAGCACATCTGCAGGATTCGCGAAATGCCGCCCGTGACGCTCTATCG
CGAGTTGTCGATGCTGGCGGGCGAATTGTCGACGTTCGTGCGTCCGCAAACGCGCCGGCCCCGGCCGACGCCCGGCTACG
ATCACGCGCAGTTGTACGCGAGCATTCGCCCGCTGGTCGACGAGGTGCATTACCTGTTGAACCAGGTGCTGATTCGAGGC
GCCCAGCCGATTCCGCTCACCGAGCAGCCGCACGGCATTCGCGTGGCCACGATGTTGCCGTCTGAGCTCGCGGGTTATTC
GAGCCTCGTGCTCGCGGTCGGCGCGCAAATGTCTCCGGACGTGCTGCAGCAGCAGTTCGCATCCCAAACGAAGATCAGCC
ATCCGCAGCGGCTGCCGGAGCTCATTCGCTCTCACTTGCCGGGCATGACGATGATTCCGTTGCCGGTGCCTCCGCGGCAG
ATTCCGTTCAATTCCAGTTATATCTATTACGAGCTTTCCCGCACGGGGCCGTTCTGGGAACAGATCGCACAACAAGGCGG
GCTTGCGATGCACATCGCGGGTCACTTCCCTGAACTCAAGCTCGAACTTTGGGGAGTGCGTCACAAATGA