Detailed information of component protein
Summary
External database links
Locus tag (Gene) | BTH_RS00635 |
Coordinate (Strand) | 143315..143857 (+) |
NCBI ID | WP_011400803.1 |
RefSeq | NC_007650 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS-SciN | PF12790.9 | 8.4e-35 | 44..169 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-180 | MVSQFFFRREAARRTAVKRIVAAMVCASLAACASLPARKETADLIVKIKVSEGANPDEHERPAPVMVRLYELKSAGAFENADFFTLQSDSRKVLGDDAIATDEFVMRPGDTRDIHRRADSAATSIGVLVGYRALGKSVWRAVHKLPPVPEDAWYRAFTPRTKIKLNVDVGQQTVSITELE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
LIPO(Sec/SPII) | 0.8617 | pos: 31-32. LAA-CA. | MVSQFFFRREAARRTAVKRIVAAMVCASLAA |
Protein sequence: 181 a.a.
>T6CP001039 NC_007650:143315-143857 [Burkholderia thailandensis E264] [TssJ]
MVSQFFFRREAARRTAVKRIVAAMVCASLAACASLPARKETADLIVKIKVSEGANPDEHERPAPVMVRLYELKSAGAFEN
ADFFTLQSDSRKVLGDDAIATDEFVMRPGDTRDIHRRADSAATSIGVLVGYRALGKSVWRAVHKLPPVPEDAWYRAFTPR
TKIKLNVDVGQQTVSITELE*
MVSQFFFRREAARRTAVKRIVAAMVCASLAACASLPARKETADLIVKIKVSEGANPDEHERPAPVMVRLYELKSAGAFEN
ADFFTLQSDSRKVLGDDAIATDEFVMRPGDTRDIHRRADSAATSIGVLVGYRALGKSVWRAVHKLPPVPEDAWYRAFTPR
TKIKLNVDVGQQTVSITELE*
Nucleotide sequence: 543 bp
>T6CP001039 NC_007650:143315-143857 [Burkholderia thailandensis E264] [TssJ]
ATGGTTTCCCAATTTTTCTTTCGCCGCGAAGCGGCCAGGCGAACCGCGGTCAAGCGGATCGTGGCGGCAATGGTATGCGC
GTCGCTCGCGGCGTGCGCAAGCTTGCCGGCACGCAAGGAAACAGCCGATCTGATCGTGAAGATCAAGGTGAGCGAAGGCG
CGAACCCGGATGAGCATGAACGCCCGGCGCCCGTGATGGTGCGGCTGTACGAGCTGAAATCGGCCGGCGCGTTCGAGAAC
GCCGATTTTTTCACGCTGCAGAGCGACAGCCGGAAGGTGTTGGGTGACGACGCGATCGCGACGGATGAATTCGTGATGCG
TCCGGGCGACACCCGAGATATTCACCGGCGCGCCGATTCCGCGGCCACGTCGATCGGCGTGCTGGTGGGCTATCGGGCGC
TCGGCAAATCGGTGTGGCGGGCGGTGCATAAGCTGCCGCCGGTTCCCGAAGATGCATGGTACCGGGCATTCACGCCAAGG
ACGAAGATCAAGTTGAACGTCGATGTCGGGCAGCAAACCGTGTCGATTACAGAATTGGAATGA
ATGGTTTCCCAATTTTTCTTTCGCCGCGAAGCGGCCAGGCGAACCGCGGTCAAGCGGATCGTGGCGGCAATGGTATGCGC
GTCGCTCGCGGCGTGCGCAAGCTTGCCGGCACGCAAGGAAACAGCCGATCTGATCGTGAAGATCAAGGTGAGCGAAGGCG
CGAACCCGGATGAGCATGAACGCCCGGCGCCCGTGATGGTGCGGCTGTACGAGCTGAAATCGGCCGGCGCGTTCGAGAAC
GCCGATTTTTTCACGCTGCAGAGCGACAGCCGGAAGGTGTTGGGTGACGACGCGATCGCGACGGATGAATTCGTGATGCG
TCCGGGCGACACCCGAGATATTCACCGGCGCGCCGATTCCGCGGCCACGTCGATCGGCGTGCTGGTGGGCTATCGGGCGC
TCGGCAAATCGGTGTGGCGGGCGGTGCATAAGCTGCCGCCGGTTCCCGAAGATGCATGGTACCGGGCATTCACGCCAAGG
ACGAAGATCAAGTTGAACGTCGATGTCGGGCAGCAAACCGTGTCGATTACAGAATTGGAATGA