Detailed information of component protein


Summary

Component ID T6CP000684
Component protein type TssK
T6SS ID (Type) T6SS00076 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (468 a.a.); Nucleotide sequence (1404 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS30305
Coordinate (Strand) 2852544..2853947 (-)
NCBI ID WP_004530163.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.1e-160 30..465
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-467 MNEPVLSATPAAALRQRVIWTEGMFLRPQHFQQLERHWERYVGMRCLPLQGFYWGYDELQIDRELLALGKVALLAATGVMRDGTPFDLSHPDDRPEPLDVPADAKDQLVVLALPLWRGGAQEVSFGAGGNGEGRGGDGNAHAGFARYVVREYEVADANEVALGPALLQTGRLNVRLMLESELTGDWQALGVARVVERRTDGRLLVDDGYIPPRLVAQRDPVLLRHTRELHGLLTQRSEALGERLSEPGRGGVSEVADFLLLQLVNRYLALTWHAQQDVAAHPETLFCDWLKLACDLSTFTAAGRRPQSLAVYRHDDLRASFGELMAELRRSLSTVLEQNAIQIELRDVGNGMKVATIADPALRDTAGFVLAVRADVPADSLRARFPAQAKLGPVERIRDLVQLQLPGIAMRQLPVAPRQIPYHAGHTYFEIDKGGEMWKQLERSGGLAFHFAGEFPGLSMEFWAIRG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -


  Protein sequence: 468 a.a.    

>T6CP000684 NC_006351:c2853947-2852544 [Burkholderia pseudomallei K96243] [TssK]
MNEPVLSATPAAALRQRVIWTEGMFLRPQHFQQLERHWERYVGMRCLPLQGFYWGYDELQIDRELLALGKVALLAATGVM
RDGTPFDLSHPDDRPEPLDVPADAKDQLVVLALPLWRGGAQEVSFGAGGNGEGRGGDGNAHAGFARYVVREYEVADANEV
ALGPALLQTGRLNVRLMLESELTGDWQALGVARVVERRTDGRLLVDDGYIPPRLVAQRDPVLLRHTRELHGLLTQRSEAL
GERLSEPGRGGVSEVADFLLLQLVNRYLALTWHAQQDVAAHPETLFCDWLKLACDLSTFTAAGRRPQSLAVYRHDDLRAS
FGELMAELRRSLSTVLEQNAIQIELRDVGNGMKVATIADPALRDTAGFVLAVRADVPADSLRARFPAQAKLGPVERIRDL
VQLQLPGIAMRQLPVAPRQIPYHAGHTYFEIDKGGEMWKQLERSGGLAFHFAGEFPGLSMEFWAIRG*

  Nucleotide sequence: 1404 bp    

>T6CP000684 NC_006351:c2853947-2852544 [Burkholderia pseudomallei K96243] [TssK]
ATGAACGAGCCGGTATTGTCCGCGACCCCCGCTGCGGCGTTGCGCCAGCGCGTGATCTGGACCGAGGGCATGTTCCTGCG
GCCGCAGCATTTCCAGCAGCTCGAGCGGCACTGGGAGCGCTACGTCGGCATGCGCTGCCTGCCGCTGCAAGGCTTCTACT
GGGGCTACGACGAGTTGCAGATCGATCGCGAGCTGCTCGCGCTCGGCAAGGTCGCGCTGCTCGCCGCGACCGGCGTGATG
CGCGACGGCACGCCGTTCGACCTGTCGCATCCGGACGACCGGCCCGAGCCGCTCGACGTGCCCGCCGACGCGAAGGATCA
GCTCGTCGTGCTCGCGCTGCCGCTGTGGCGCGGCGGCGCGCAGGAGGTGTCGTTCGGCGCGGGCGGCAACGGCGAAGGCC
GCGGCGGCGACGGCAACGCGCACGCGGGCTTCGCGCGCTACGTCGTGCGCGAATACGAAGTCGCCGACGCGAACGAGGTC
GCGCTCGGCCCCGCGCTATTGCAGACCGGCCGCCTGAACGTGCGCCTGATGCTCGAATCCGAATTGACGGGCGACTGGCA
GGCGCTCGGCGTCGCGCGCGTCGTCGAGCGGCGCACCGATGGGCGGCTGCTCGTCGACGACGGCTACATTCCGCCGCGGC
TCGTCGCGCAGCGCGATCCGGTGCTGCTGCGCCACACGCGCGAGCTGCACGGGCTGCTCACGCAACGCAGCGAGGCGCTC
GGCGAGCGCCTGTCGGAGCCGGGGCGCGGCGGCGTGTCCGAAGTCGCCGATTTCCTGCTGCTGCAACTCGTCAACCGCTA
TCTGGCGCTCACGTGGCACGCGCAGCAGGATGTCGCCGCGCACCCGGAGACGCTGTTCTGCGATTGGCTGAAGCTCGCGT
GCGACCTGAGCACATTCACCGCGGCCGGCCGCCGGCCGCAGTCGCTCGCGGTCTACCGGCACGACGATCTGCGCGCGAGC
TTCGGCGAGCTGATGGCCGAGCTGCGCCGCTCATTGTCGACGGTGCTCGAGCAGAACGCGATCCAGATCGAGCTGCGCGA
CGTGGGCAACGGCATGAAGGTCGCGACGATCGCCGATCCGGCGCTGCGCGACACGGCGGGCTTCGTGCTCGCCGTGCGCG
CCGACGTGCCGGCCGACAGCCTGCGCGCGCGCTTTCCCGCGCAGGCGAAGCTCGGTCCCGTCGAGCGCATTCGCGATCTC
GTGCAGTTGCAACTGCCGGGCATCGCGATGCGGCAGTTGCCCGTCGCGCCGCGGCAGATTCCGTATCACGCGGGCCACAC
GTACTTCGAGATCGACAAGGGCGGCGAGATGTGGAAACAGCTCGAACGCTCGGGCGGCCTCGCATTTCATTTCGCCGGCG
AATTCCCGGGACTCTCGATGGAGTTCTGGGCGATTCGCGGGTGA