Detailed information of component protein


Summary

Component ID T6CP000682
Component protein type TssM
T6SS ID (Type) T6SS00076 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (1210 a.a.); Nucleotide sequence (3630 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS30295
Coordinate (Strand) 2847580..2851209 (-)
NCBI ID WP_004524806.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 3e-90 217..475
IcmF-related PF06761.14 7.2e-89 527..835
IcmF_C PF06744.14 3.1e-26 1086..1190
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-16 MSHAVARIVRPLPSRD
Transmembrane helix 17-39 IWTFAGLVVLACFVWLAGPLFAF
Outside 40-48 AEFRPFESG
Transmembrane helix 49-68 AVRAATIVALFVAWGARIAW
Inside 69-469 RGWRAGQLNAQLLNQLREAAPRPAATGDPAQAQLDELRSRFDEAATLLKKVRFGEADGARKGLPRWLEQMSRQYLYQLPWYVFIGAPGSGKTTALVNSGLSFPLAEQFGRAAIRGVGGTRHCDWWFTNDAVLIDTAGRYTTHESNRALDEAEWKGFVDLLKKYRARQPLNGAMLTISVADLLGASEAERTQHAMVLRKRLLELRAQLGIRFPVYLLVTKADLLAGFAEYFGGFGRAECAQVWGFTFPLAESEAPGFELRAAFDREYRLLHQRLNDGLPELLASQTDARQREMTYLLPQQIADLQDMLGQFVAEVFSVSSFEPMPMLRGVYLTSGTQEGTAFDRVMSGIKRFLKIEGVPPAAQTGSSGRSFFLKSLLQDHIFREAALAGSNLRWHQRQRALQ
Transmembrane helix 470-488 IVGYAAIALLCVAVLFAWL
Outside 489-1209 RSYSRNRDYLDEVAARVPAVDAQIGRAKFTGAADIVQLLPVLDELSGLPNAGGVDLRHPPLAYRWGLFQGEKIEEASDAVYRRALDDVLLPIAASRMEQALRDARPDEVEYAYAALKAYLMLYDSAHYDPAFVQAVVDLEMERALPADFSSAQRSALRAHLGALFGNRVAVSPFPMNERLVADVRERLRQVPFSQRLYRQLARTLHASTASYDFSVARAVGPDASLVFRRQSGKSLADGVPGLYTRSGYRNVFAPRLPGAIDSYGREEVWVLNLGASEIPNPADAAAWARDIRQLYLNDYIKTWDDYLADIRLQRTSTLAQSIQVARTLSSADSPLTRLMVALARDTPLGDAPGGARNLASRAQDKVDEARNSLAQIFAGQPGGEAGAAAAPPASPEQIVDSHFAGLRAFAPGGGDQAASFDAVLKAIDALYTYLTATDDALRSGAAPPPSDAPARLRAQAGRLPTPVREVLDDLSNVANGSIASVEQRNVAQRAGANVGDFCRQAIAGRYPFARGAARDVAPSDFAQLFAAGGLMDDFFQKNLQTLVDTTAHPWRFNNRNAEADPSAAAMLGSFEKAAVIRDVYFGGGARTAQIKVEIVPLEMDPSISEMLLDVDGQIVRYAHGPQVPTAVQWPGTRGSNQVRLQVTEQSGATGGFTTEGPWALHRLFDRAGVSGGRGPEQMVARFAVDGKPIVLQVTASSVRNPFRLPQMESFTCPPKQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9653 - -


  Protein sequence: 1210 a.a.    

>T6CP000682 NC_006351:c2851209-2847580 [Burkholderia pseudomallei K96243] [TssM]
MSHAVARIVRPLPSRDIWTFAGLVVLACFVWLAGPLFAFAEFRPFESGAVRAATIVALFVAWGARIAWRGWRAGQLNAQL
LNQLREAAPRPAATGDPAQAQLDELRSRFDEAATLLKKVRFGEADGARKGLPRWLEQMSRQYLYQLPWYVFIGAPGSGKT
TALVNSGLSFPLAEQFGRAAIRGVGGTRHCDWWFTNDAVLIDTAGRYTTHESNRALDEAEWKGFVDLLKKYRARQPLNGA
MLTISVADLLGASEAERTQHAMVLRKRLLELRAQLGIRFPVYLLVTKADLLAGFAEYFGGFGRAECAQVWGFTFPLAESE
APGFELRAAFDREYRLLHQRLNDGLPELLASQTDARQREMTYLLPQQIADLQDMLGQFVAEVFSVSSFEPMPMLRGVYLT
SGTQEGTAFDRVMSGIKRFLKIEGVPPAAQTGSSGRSFFLKSLLQDHIFREAALAGSNLRWHQRQRALQIVGYAAIALLC
VAVLFAWLRSYSRNRDYLDEVAARVPAVDAQIGRAKFTGAADIVQLLPVLDELSGLPNAGGVDLRHPPLAYRWGLFQGEK
IEEASDAVYRRALDDVLLPIAASRMEQALRDARPDEVEYAYAALKAYLMLYDSAHYDPAFVQAVVDLEMERALPADFSSA
QRSALRAHLGALFGNRVAVSPFPMNERLVADVRERLRQVPFSQRLYRQLARTLHASTASYDFSVARAVGPDASLVFRRQS
GKSLADGVPGLYTRSGYRNVFAPRLPGAIDSYGREEVWVLNLGASEIPNPADAAAWARDIRQLYLNDYIKTWDDYLADIR
LQRTSTLAQSIQVARTLSSADSPLTRLMVALARDTPLGDAPGGARNLASRAQDKVDEARNSLAQIFAGQPGGEAGAAAAP
PASPEQIVDSHFAGLRAFAPGGGDQAASFDAVLKAIDALYTYLTATDDALRSGAAPPPSDAPARLRAQAGRLPTPVREVL
DDLSNVANGSIASVEQRNVAQRAGANVGDFCRQAIAGRYPFARGAARDVAPSDFAQLFAAGGLMDDFFQKNLQTLVDTTA
HPWRFNNRNAEADPSAAAMLGSFEKAAVIRDVYFGGGARTAQIKVEIVPLEMDPSISEMLLDVDGQIVRYAHGPQVPTAV
QWPGTRGSNQVRLQVTEQSGATGGFTTEGPWALHRLFDRAGVSGGRGPEQMVARFAVDGKPIVLQVTASSVRNPFRLPQM
ESFTCPPKQ*

  Nucleotide sequence: 3630 bp    

>T6CP000682 NC_006351:c2851209-2847580 [Burkholderia pseudomallei K96243] [TssM]
ATGAGCCACGCTGTCGCACGCATCGTTCGCCCGCTGCCGTCGCGGGACATCTGGACGTTCGCCGGCCTCGTCGTGCTGGC
GTGTTTCGTTTGGCTTGCCGGGCCGCTGTTCGCGTTCGCCGAGTTCCGCCCGTTCGAGAGCGGCGCGGTGCGCGCGGCGA
CGATCGTCGCGCTGTTCGTCGCGTGGGGCGCGCGGATCGCGTGGCGCGGCTGGCGCGCGGGGCAACTGAACGCGCAGTTG
CTCAACCAGTTGCGCGAAGCGGCGCCGCGGCCCGCCGCGACGGGCGATCCCGCGCAGGCGCAGCTCGACGAGCTGCGCAG
CCGCTTCGACGAAGCCGCGACGCTGTTGAAGAAAGTCCGTTTCGGCGAAGCCGACGGCGCGCGCAAGGGCCTGCCGCGGT
GGCTCGAGCAGATGTCGCGCCAGTATCTGTACCAACTGCCGTGGTACGTGTTCATCGGCGCGCCGGGCTCGGGCAAGACG
ACGGCGCTCGTCAACTCGGGGCTGAGCTTTCCGCTCGCCGAGCAGTTCGGGCGCGCGGCGATTCGCGGCGTCGGCGGCAC
GCGGCACTGCGACTGGTGGTTCACGAACGACGCGGTGCTGATCGACACCGCGGGCCGCTACACGACGCACGAGAGCAACC
GCGCGCTCGACGAGGCCGAATGGAAGGGCTTCGTCGATCTGCTGAAGAAGTACCGCGCGCGCCAGCCGCTGAACGGCGCG
ATGCTGACGATCAGCGTCGCCGATCTGCTCGGCGCGTCGGAGGCGGAGCGCACGCAGCACGCGATGGTGCTGCGCAAGCG
CCTGCTCGAGCTGCGCGCGCAGCTCGGCATCCGCTTTCCGGTGTATCTGCTCGTGACGAAGGCGGATTTGCTCGCCGGCT
TCGCCGAATACTTCGGCGGCTTCGGCCGCGCCGAATGCGCGCAGGTGTGGGGCTTCACGTTCCCGCTCGCCGAGAGCGAA
GCGCCCGGCTTCGAGCTGCGCGCGGCGTTCGACCGCGAATACCGGCTGCTGCACCAGCGGCTGAACGACGGGCTGCCGGA
GCTGCTCGCATCGCAGACCGACGCGCGCCAGCGCGAGATGACCTACCTGCTGCCGCAGCAGATCGCCGATCTGCAGGACA
TGCTCGGCCAGTTCGTCGCCGAGGTGTTCTCGGTGTCGAGCTTCGAGCCGATGCCGATGCTGCGCGGCGTCTATCTGACG
AGCGGCACGCAGGAAGGCACCGCGTTCGACCGCGTGATGAGCGGGATCAAGCGCTTCCTGAAGATCGAGGGCGTGCCGCC
CGCCGCGCAGACGGGCTCGTCGGGCCGCAGTTTCTTCCTGAAATCGCTGCTGCAGGATCACATCTTTCGCGAGGCGGCGC
TTGCCGGCAGCAATCTGCGCTGGCATCAGCGGCAGCGTGCGCTGCAGATCGTCGGCTACGCGGCGATCGCGCTGCTGTGC
GTGGCGGTGCTGTTCGCGTGGCTGCGCAGCTACTCGCGCAATCGCGACTATCTCGACGAGGTCGCCGCGCGCGTGCCGGC
GGTCGACGCGCAGATCGGCCGCGCGAAATTCACGGGCGCGGCCGACATCGTGCAGCTGCTGCCGGTGCTCGACGAGCTGA
GCGGCCTGCCGAACGCGGGCGGCGTGGACTTGCGGCATCCGCCGCTCGCGTATCGCTGGGGCCTGTTCCAGGGCGAGAAG
ATCGAGGAGGCGAGCGACGCCGTCTACCGGCGCGCGCTCGACGACGTGCTGCTGCCGATCGCCGCGAGCCGGATGGAGCA
GGCGCTGCGCGACGCGCGGCCCGACGAGGTCGAGTATGCGTACGCGGCGCTCAAGGCGTACCTGATGCTTTACGACAGCG
CGCACTACGATCCCGCGTTCGTGCAGGCCGTCGTCGATCTCGAGATGGAGCGCGCGCTGCCGGCCGATTTCTCGTCCGCG
CAGCGCAGCGCGCTGCGCGCGCATCTCGGCGCGCTGTTCGGCAATCGCGTCGCGGTGTCGCCGTTTCCGATGAACGAGCG
GCTCGTCGCCGACGTGCGCGAGCGGCTGCGGCAGGTGCCGTTCTCGCAGCGGCTGTATCGGCAGCTCGCGCGCACGCTGC
ACGCGAGCACCGCGTCGTACGATTTCAGCGTCGCGCGCGCGGTGGGGCCGGACGCGTCGCTCGTGTTCCGGCGGCAGAGC
GGCAAGAGCCTCGCCGACGGCGTGCCGGGCCTCTACACGCGCAGCGGCTACCGCAACGTGTTCGCGCCGCGTCTGCCCGG
CGCGATCGACTCGTACGGGCGCGAGGAGGTGTGGGTGCTGAACCTCGGCGCGTCCGAGATCCCGAATCCGGCCGACGCGG
CCGCCTGGGCGCGCGACATCCGGCAGCTCTACCTGAACGACTACATCAAGACCTGGGACGACTATCTGGCCGACATCCGG
CTGCAGCGCACGTCGACGCTCGCGCAGAGCATCCAGGTCGCGCGCACGCTGTCGTCGGCCGATTCGCCGCTCACGCGGCT
GATGGTCGCGCTCGCGCGCGACACGCCGCTCGGCGATGCGCCCGGCGGCGCGCGCAATCTCGCGTCGCGCGCGCAGGACA
AGGTCGACGAGGCGCGCAACTCGCTCGCGCAGATCTTCGCCGGGCAGCCGGGCGGCGAAGCGGGCGCGGCGGCCGCGCCG
CCCGCGAGCCCCGAGCAGATCGTCGACAGCCACTTCGCGGGGCTGCGCGCGTTCGCGCCGGGCGGCGGGGATCAGGCGGC
GTCGTTCGACGCGGTGCTCAAGGCGATCGACGCGCTGTACACGTACCTCACCGCGACCGACGACGCATTGCGCAGCGGCG
CGGCGCCGCCGCCGTCGGACGCGCCCGCGCGGCTGCGCGCGCAGGCGGGCCGGTTGCCGACGCCTGTGCGCGAGGTGCTC
GACGATTTGTCGAACGTCGCGAACGGCAGCATCGCGAGCGTCGAGCAGCGCAACGTCGCGCAGCGCGCGGGCGCGAACGT
CGGCGATTTCTGCCGGCAGGCGATCGCCGGGCGCTACCCGTTCGCGCGCGGCGCGGCGCGCGACGTCGCGCCGTCCGATT
TCGCGCAGCTGTTCGCGGCGGGCGGCCTGATGGACGACTTCTTCCAGAAGAACCTGCAAACGCTCGTCGACACGACCGCG
CATCCGTGGCGTTTCAACAACCGCAACGCCGAAGCCGACCCGTCGGCGGCCGCGATGCTCGGCTCGTTCGAGAAGGCGGC
GGTGATCCGCGACGTCTATTTCGGAGGCGGCGCGCGGACCGCGCAGATCAAGGTCGAGATCGTGCCGCTCGAAATGGACC
CGTCGATCTCGGAGATGCTGCTCGACGTCGACGGCCAGATCGTCCGCTACGCGCACGGCCCGCAGGTGCCGACGGCGGTG
CAGTGGCCCGGCACGCGCGGCAGCAATCAGGTGCGGCTGCAGGTGACCGAGCAGTCGGGGGCGACGGGCGGCTTCACGAC
CGAGGGCCCGTGGGCGCTGCACCGGCTGTTCGACCGCGCGGGCGTGTCGGGTGGGCGCGGACCCGAGCAGATGGTCGCGA
GATTCGCGGTCGACGGCAAGCCGATCGTGCTGCAGGTGACGGCGAGCAGCGTTCGCAACCCGTTCCGGTTGCCGCAGATG
GAGTCCTTTACATGTCCTCCGAAGCAATGA