SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000681
Component protein type	TssA
T6SS ID (Type)	T6SS00076 (Type i3)
Strain	Burkholderia pseudomallei K96243
Replicon	chromosome II
Sequence	Protein sequence (360 a.a.); Nucleotide sequence (1080 bp)
Reference	[1] Burtnick MN, Brett PJ, Harding SV, et al. The cluster 1 type VI secretion system is a major virulence determinant in Burkholderia pseudomallei. Infect Immun. 2011 Apr;79(4):1512-25. doi: 10.1128/IAI.01218-10. Epub 2011 Feb 7. PMID: 21300775

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	BPS_RS30275
Coordinate (Strand)	2842684..2843763 (-)
NCBI ID	WP_009982092.1
RefSeq	NC_006351
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
ImpA_N	PF06812.14	2.1e-35	12..134

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-359	MQSSDPIESLLAGVAPDAPCGANLEYEQDFLRLQESATPRPEQQYGDTVIPAEAPDWSAVERLALELTARTKDLRVAAHLARSWTELRGMPGYADGLRLVAGMLDRWWDDVHPRLDADGDHDPAPRANALAEIAGAHGCARAARRQALFDGGPSVRDAERVFDGRDGGEHGYPGGRERLIADLVRARDGGQPTLQAAFAALDALDAIRARVASALGGEWVPDASDFEKALRRIVRDGLPPPAAAPAATNGAANVANAAHGGAANGVTNSAANGAASGGAPAFAANGRAWRDAELTSRDDVQLGLEKMCRYFELHEPSHPAPILLRRAQRLLSLDFYEIIRDLAPESLPKLDLLSGQRNE

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9757	-	-

Protein sequence: 360 a.a.

						>T6CP000681 NC_006351:c2843763-2842684 [Burkholderia pseudomallei K96243] [TssA]
MQSSDPIESLLAGVAPDAPCGANLEYEQDFLRLQESATPRPEQQYGDTVIPAEAPDWSAVERLALELTARTKDLRVAAHL
ARSWTELRGMPGYADGLRLVAGMLDRWWDDVHPRLDADGDHDPAPRANALAEIAGAHGCARAARRQALFDGGPSVRDAER
VFDGRDGGEHGYPGGRERLIADLVRARDGGQPTLQAAFAALDALDAIRARVASALGGEWVPDASDFEKALRRIVRDGLPP
PAAAPAATNGAANVANAAHGGAANGVTNSAANGAASGGAPAFAANGRAWRDAELTSRDDVQLGLEKMCRYFELHEPSHPA
PILLRRAQRLLSLDFYEIIRDLAPESLPKLDLLSGQRNE*					

Nucleotide sequence: 1080 bp

						>T6CP000681 NC_006351:c2843763-2842684 [Burkholderia pseudomallei K96243] [TssA]
ATGCAGAGTTCAGACCCGATCGAATCGTTGCTCGCCGGCGTCGCGCCCGACGCGCCGTGCGGCGCGAATCTCGAATACGA
GCAGGATTTCCTGCGGCTGCAGGAGAGCGCGACGCCGCGGCCCGAACAGCAGTACGGCGACACCGTGATCCCGGCCGAAG
CGCCGGACTGGAGCGCGGTCGAGCGTCTCGCGCTCGAGCTGACGGCGCGCACGAAGGATCTGCGCGTGGCCGCGCATCTC
GCGCGCAGTTGGACCGAACTGCGCGGCATGCCCGGCTACGCGGACGGGCTGAGGCTCGTCGCGGGGATGCTGGACCGGTG
GTGGGACGACGTGCATCCGCGCCTGGACGCCGACGGCGACCACGACCCGGCCCCGCGCGCGAACGCGCTGGCGGAAATCG
CGGGCGCGCACGGCTGCGCGCGCGCCGCGCGCCGGCAGGCGCTCTTCGATGGCGGCCCGAGCGTGCGCGATGCCGAGCGC
GTGTTCGATGGCCGCGACGGCGGCGAGCACGGCTACCCGGGCGGCCGCGAGCGGCTGATCGCCGATCTGGTTCGCGCGCG
CGACGGCGGGCAGCCGACGCTGCAGGCGGCGTTCGCCGCGCTCGACGCGCTCGATGCGATTCGCGCGCGCGTCGCATCGG
CGCTCGGCGGCGAATGGGTGCCCGACGCGAGCGACTTCGAGAAGGCGCTGCGCCGGATCGTGCGCGACGGGTTGCCGCCG
CCCGCGGCCGCGCCCGCCGCGACAAACGGCGCGGCGAATGTGGCGAATGCGGCGCACGGCGGCGCGGCAAACGGCGTCAC
GAACAGTGCCGCGAACGGCGCGGCTTCGGGCGGCGCGCCGGCTTTCGCCGCGAACGGCCGCGCGTGGCGCGATGCGGAGC
TGACGAGCCGCGACGACGTTCAGCTCGGCCTCGAAAAAATGTGCCGCTACTTCGAGCTGCACGAGCCGAGCCATCCGGCG
CCGATCCTGCTGCGCCGCGCGCAGCGGCTGCTGTCGCTCGACTTCTACGAAATCATCCGGGATCTCGCGCCGGAGAGCCT
GCCGAAGCTCGACTTGCTGAGCGGCCAGCGCAACGAATGA					