Detailed information of component protein
Summary
| Component ID | T6CP000680 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00076  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (193 a.a.); Nucleotide sequence (579 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BPS_RS30270 |
| Coordinate (Strand) | 2842043..2842621 (-) |
| NCBI ID | WP_004524810.1 |
| RefSeq | NC_006351 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 4e-56 | 16..165 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-192 | MTSKYKASASGQKFIARNRAPRVQIEYDVETYGAERKVQLPFVMGVIADLAGKRAEPLPDLPERKFLEIDVDNFDERMKSIAPRVAFQVPNTLSGDGMLSVDMTFESIDDFSPAAIARNVDALRRLLDARTELSNLLSYMDGKHGAEQLIENAINDPALLASLVRQPLAADAEGGARQPVTGTEDDPEIRHE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9932 | - | - |
Protein sequence: 193 a.a.
>T6CP000680 NC_006351:c2842621-2842043 [Burkholderia pseudomallei K96243] [TssB]
MTSKYKASASGQKFIARNRAPRVQIEYDVETYGAERKVQLPFVMGVIADLAGKRAEPLPDLPERKFLEIDVDNFDERMKS
IAPRVAFQVPNTLSGDGMLSVDMTFESIDDFSPAAIARNVDALRRLLDARTELSNLLSYMDGKHGAEQLIENAINDPALL
ASLVRQPLAADAEGGARQPVTGTEDDPEIRHE*
MTSKYKASASGQKFIARNRAPRVQIEYDVETYGAERKVQLPFVMGVIADLAGKRAEPLPDLPERKFLEIDVDNFDERMKS
IAPRVAFQVPNTLSGDGMLSVDMTFESIDDFSPAAIARNVDALRRLLDARTELSNLLSYMDGKHGAEQLIENAINDPALL
ASLVRQPLAADAEGGARQPVTGTEDDPEIRHE*
Nucleotide sequence: 579 bp
>T6CP000680 NC_006351:c2842621-2842043 [Burkholderia pseudomallei K96243] [TssB]
ATGACGAGCAAGTACAAGGCTTCGGCCAGCGGACAGAAATTCATCGCGCGCAACCGCGCGCCGCGCGTGCAGATCGAGTA
CGACGTCGAGACCTACGGCGCCGAGCGCAAGGTCCAACTGCCGTTCGTGATGGGCGTGATCGCGGATCTCGCGGGCAAGC
GGGCCGAGCCGCTGCCGGACTTGCCGGAGCGCAAGTTCCTCGAAATCGACGTCGACAATTTCGACGAGCGGATGAAATCG
ATCGCGCCGCGCGTCGCGTTCCAGGTGCCGAACACGCTGTCGGGAGACGGCATGCTGAGCGTCGACATGACGTTCGAGAG
CATCGACGATTTCTCGCCCGCCGCGATCGCGCGCAACGTCGACGCGTTGCGGCGCCTGCTCGACGCGCGCACCGAGCTGT
CGAACCTGCTGTCGTACATGGACGGCAAGCACGGCGCCGAGCAACTGATCGAAAACGCGATCAACGATCCGGCACTGCTG
GCCTCGCTCGTGCGGCAGCCGCTCGCGGCGGACGCCGAAGGCGGCGCGCGGCAGCCCGTGACCGGCACCGAAGACGACCC
GGAGATTCGCCATGAATGA
ATGACGAGCAAGTACAAGGCTTCGGCCAGCGGACAGAAATTCATCGCGCGCAACCGCGCGCCGCGCGTGCAGATCGAGTA
CGACGTCGAGACCTACGGCGCCGAGCGCAAGGTCCAACTGCCGTTCGTGATGGGCGTGATCGCGGATCTCGCGGGCAAGC
GGGCCGAGCCGCTGCCGGACTTGCCGGAGCGCAAGTTCCTCGAAATCGACGTCGACAATTTCGACGAGCGGATGAAATCG
ATCGCGCCGCGCGTCGCGTTCCAGGTGCCGAACACGCTGTCGGGAGACGGCATGCTGAGCGTCGACATGACGTTCGAGAG
CATCGACGATTTCTCGCCCGCCGCGATCGCGCGCAACGTCGACGCGTTGCGGCGCCTGCTCGACGCGCGCACCGAGCTGT
CGAACCTGCTGTCGTACATGGACGGCAAGCACGGCGCCGAGCAACTGATCGAAAACGCGATCAACGATCCGGCACTGCTG
GCCTCGCTCGTGCGGCAGCCGCTCGCGGCGGACGCCGAAGGCGGCGCGCGGCAGCCCGTGACCGGCACCGAAGACGACCC
GGAGATTCGCCATGAATGA