Detailed information of component protein
Summary
| Component ID | T6CP000678 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00076  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BPS_RS30260 |
| Coordinate (Strand) | 2839991..2840482 (-) |
| NCBI ID | WP_004190698.1 |
| RefSeq | NC_006351 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.7e-33 | 6..138 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MGVAMFMKVDGVTGESADAQHKGWTDIQSFSWGASQPGAMASGSGGNAGKASFNDLVVAAYMDKGATAIIKNCASGKHLPTVEISACKTGGSQIEFMRVTLQEVLVTSAQIAGVDPGDAADRLMMQYGFQAAKVKKQYWQQNDNGGKGAEVSVGWNIKENTEM |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9150 | - | - |
Protein sequence: 164 a.a.
>T6CP000678 NC_006351:c2840482-2839991 [Burkholderia pseudomallei K96243] [TssD]
MGVAMFMKVDGVTGESADAQHKGWTDIQSFSWGASQPGAMASGSGGNAGKASFNDLVVAAYMDKGATAIIKNCASGKHLP
TVEISACKTGGSQIEFMRVTLQEVLVTSAQIAGVDPGDAADRLMMQYGFQAAKVKKQYWQQNDNGGKGAEVSVGWNIKEN
TEM*
MGVAMFMKVDGVTGESADAQHKGWTDIQSFSWGASQPGAMASGSGGNAGKASFNDLVVAAYMDKGATAIIKNCASGKHLP
TVEISACKTGGSQIEFMRVTLQEVLVTSAQIAGVDPGDAADRLMMQYGFQAAKVKKQYWQQNDNGGKGAEVSVGWNIKEN
TEM*
Nucleotide sequence: 492 bp
>T6CP000678 NC_006351:c2840482-2839991 [Burkholderia pseudomallei K96243] [TssD]
ATGGGCGTCGCAATGTTTATGAAAGTGGACGGCGTCACCGGCGAATCGGCCGACGCGCAGCACAAGGGCTGGACCGACAT
CCAGTCGTTCTCATGGGGCGCGAGCCAGCCGGGCGCGATGGCGAGCGGCAGCGGCGGCAACGCGGGCAAGGCGAGCTTCA
ACGATCTCGTCGTCGCCGCGTACATGGACAAGGGCGCAACGGCGATCATCAAGAACTGCGCGAGCGGCAAGCACCTGCCG
ACGGTCGAGATATCGGCGTGCAAGACGGGCGGCTCGCAGATCGAGTTCATGCGCGTGACGCTGCAGGAAGTGCTCGTCAC
GTCCGCGCAGATCGCGGGCGTGGACCCGGGCGACGCGGCCGACCGGCTGATGATGCAGTACGGTTTTCAGGCCGCGAAGG
TCAAGAAGCAGTACTGGCAGCAGAACGACAACGGCGGCAAGGGCGCCGAAGTGTCGGTCGGCTGGAACATCAAGGAGAAC
ACCGAGATGTGA
ATGGGCGTCGCAATGTTTATGAAAGTGGACGGCGTCACCGGCGAATCGGCCGACGCGCAGCACAAGGGCTGGACCGACAT
CCAGTCGTTCTCATGGGGCGCGAGCCAGCCGGGCGCGATGGCGAGCGGCAGCGGCGGCAACGCGGGCAAGGCGAGCTTCA
ACGATCTCGTCGTCGCCGCGTACATGGACAAGGGCGCAACGGCGATCATCAAGAACTGCGCGAGCGGCAAGCACCTGCCG
ACGGTCGAGATATCGGCGTGCAAGACGGGCGGCTCGCAGATCGAGTTCATGCGCGTGACGCTGCAGGAAGTGCTCGTCAC
GTCCGCGCAGATCGCGGGCGTGGACCCGGGCGACGCGGCCGACCGGCTGATGATGCAGTACGGTTTTCAGGCCGCGAAGG
TCAAGAAGCAGTACTGGCAGCAGAACGACAACGGCGGCAAGGGCGCCGAAGTGTCGGTCGGCTGGAACATCAAGGAGAAC
ACCGAGATGTGA