Detailed information of component protein


Summary

Component ID T6CP000678
Component protein type TssD
T6SS ID (Type) T6SS00076 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (164 a.a.); Nucleotide sequence (492 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) BPS_RS30260
Coordinate (Strand) 2839991..2840482 (-)
NCBI ID WP_004190698.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 1.7e-33 6..138

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-163 MGVAMFMKVDGVTGESADAQHKGWTDIQSFSWGASQPGAMASGSGGNAGKASFNDLVVAAYMDKGATAIIKNCASGKHLPTVEISACKTGGSQIEFMRVTLQEVLVTSAQIAGVDPGDAADRLMMQYGFQAAKVKKQYWQQNDNGGKGAEVSVGWNIKENTEM



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9150 - -



  Protein sequence: 164 a.a.    

>T6CP000678 NC_006351:c2840482-2839991 [Burkholderia pseudomallei K96243] [TssD]
MGVAMFMKVDGVTGESADAQHKGWTDIQSFSWGASQPGAMASGSGGNAGKASFNDLVVAAYMDKGATAIIKNCASGKHLP
TVEISACKTGGSQIEFMRVTLQEVLVTSAQIAGVDPGDAADRLMMQYGFQAAKVKKQYWQQNDNGGKGAEVSVGWNIKEN
TEM*

  Nucleotide sequence: 492 bp    

>T6CP000678 NC_006351:c2840482-2839991 [Burkholderia pseudomallei K96243] [TssD]
ATGGGCGTCGCAATGTTTATGAAAGTGGACGGCGTCACCGGCGAATCGGCCGACGCGCAGCACAAGGGCTGGACCGACAT
CCAGTCGTTCTCATGGGGCGCGAGCCAGCCGGGCGCGATGGCGAGCGGCAGCGGCGGCAACGCGGGCAAGGCGAGCTTCA
ACGATCTCGTCGTCGCCGCGTACATGGACAAGGGCGCAACGGCGATCATCAAGAACTGCGCGAGCGGCAAGCACCTGCCG
ACGGTCGAGATATCGGCGTGCAAGACGGGCGGCTCGCAGATCGAGTTCATGCGCGTGACGCTGCAGGAAGTGCTCGTCAC
GTCCGCGCAGATCGCGGGCGTGGACCCGGGCGACGCGGCCGACCGGCTGATGATGCAGTACGGTTTTCAGGCCGCGAAGG
TCAAGAAGCAGTACTGGCAGCAGAACGACAACGGCGGCAAGGGCGCCGAAGTGTCGGTCGGCTGGAACATCAAGGAGAAC
ACCGAGATGTGA