Detailed information of component protein


Summary

Component ID T6CP000676
Component protein type TssF
T6SS ID (Type) T6SS00076 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (624 a.a.); Nucleotide sequence (1872 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS30250
Coordinate (Strand) 2837548..2839419 (-)
NCBI ID WP_004524812.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.6e-237 1..620
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-623 MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARVQLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRLPAGTALRARPAAAEQTACEFRTAHDLTLWPLELAGASVTGAPAYLPRSATAARRDVRGALRIRLKARGGAGLAQLPIDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWLHALGAHALAHQGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLDRHDAALENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAVRRLAGEQRDDGQMRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSETFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGPSRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDGVHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINSFAECVLSSAQRGRLAQWPARVGRRPAI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9956 - -


  Protein sequence: 624 a.a.    

>T6CP000676 NC_006351:c2839419-2837548 [Burkholderia pseudomallei K96243] [TssF]
MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARVQLKMDAEFPRFTQALLDAVY
PGYVAPLPSMAIVQFTPMMNEGSLAQGYRLPAGTALRARPAAAEQTACEFRTAHDLTLWPLELAGASVTGAPAYLPRSAT
AARRDVRGALRIRLKARGGAGLAQLPIDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWLHALGAHALAHQGF
DADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLDRHDAALENSVDARHLALNCTPAV
NLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAVRRLAGEQRDDGQMRAFRPFHASFAGDGGNYGAYYTVRREPRLVS
AQARANGTRTGYVGSETFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGPSRPR
PPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDGVHRVAFAPVFRRLPAAGPLMFGRG
VQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINSFAECVLSSAQRGRLAQWPARVGRRPAI*

  Nucleotide sequence: 1872 bp    

>T6CP000676 NC_006351:c2839419-2837548 [Burkholderia pseudomallei K96243] [TssF]
ATGGATACGCGCCTGCTCGACTACTACAACCGCGAGCTCGCGTATCTGCGCGAGTTGGGCGGCGAGTTCGCGCAGCAGTT
TCCGAAAGTGGCCGCGCGCCTGCGGATGCACGAATCGGGGCCGCCCGATCCGTACGTCGAGCGGCTGCTCGAAGGCTTCA
GCTTTCTCACCGCGCGCGTGCAACTGAAGATGGACGCGGAGTTTCCGCGCTTCACGCAGGCGCTGCTCGACGCGGTGTAT
CCGGGTTACGTCGCGCCGCTTCCGTCGATGGCGATCGTGCAGTTCACGCCGATGATGAACGAAGGCAGCCTCGCGCAGGG
CTACCGGCTGCCGGCGGGCACCGCGCTGCGCGCGCGGCCCGCCGCGGCCGAACAGACCGCGTGCGAGTTTCGCACCGCGC
ACGATCTGACGCTGTGGCCGCTGGAGCTCGCGGGCGCTTCGGTGACGGGCGCGCCCGCGTATCTGCCGCGTTCGGCGACG
GCCGCGCGCCGCGACGTGCGCGGCGCGCTGCGCATCCGGCTGAAGGCGCGCGGCGGCGCGGGCCTCGCGCAACTGCCGAT
CGATCGGCTGATGTTCCACCTGGCGGGCCCCGAGCGCGACGCGCTGCATCTGCTCGAACTGATCGCCGGGCATACGATCG
GCGTCGTCTGCCACGACGCGGCGCAGCCGCCGCGCTGGCTGCACGCGCTCGGCGCGCACGCGCTCGCGCATCAGGGCTTC
GACGCCGATCAGGCGCTGCTGCCCGACGAAGGCCGCAGCTTCCACGGTTACCGGCTGCTGCGCGAGTACTTCGCGTTTCC
CGCGCGCTTCCTGTTCTTCAGCATCGAAGGATTGCGGCCCGCGCTCGCGCGCGCGACGGGCGACACGTTCGAGCTGACGC
TGCTGCTCGATCGGCACGACGCGGCGCTCGAGAACAGCGTCGATGCGCGGCACCTCGCGTTGAACTGCACGCCGGCCGTC
AACCTGTTCGCGCGGCGCGCGGACCGCATTCCGGTCCATCCGGGCGCGCGCGAGCATCATGTCGTCGTCGATCGCAGCCG
GCCGCTCGACTACGAGGTCTACGCGGTGCGGCGGCTCGCGGGCGAGCAGCGCGACGACGGGCAGATGCGCGCGTTCCGGC
CGTTCCATGCGTCGTTCGCGGGCGACGGCGGCAATTACGGCGCGTACTACACGGTGCGCCGCGAGCCGCGCCTCGTGTCC
GCGCAGGCGCGCGCGAACGGCACGCGCACCGGCTACGTCGGCAGCGAGACGTTCGTGTCGCTCGTCGATAGCGCGTGCGC
GCCGTATGACGAATCGATCCGCTATCTGTCCGTCGACACGCTGTGCACGAACCGCGATCTCGTCCTGCTGTTGCCGGCGG
GCGACGCGAACGCGTTCACGCTGCGCGTGTCGGCGCCCGTCGAGCGGATCGCCATGATCCGCGGGCCGTCGCGGCCGCGC
CCGCCGCTCGCCGACGCGCAGAGCGCGTGGCGGCTCGTGAGCCATCTCGGGCTCGCGCGCCACACGCTGACCGATGTCGA
CGACGAAGAAGGCGCGCGCGTGCTGCGCGAATTGCTCGGTCTGCACGCGGACCCGGCCGATGCGGCGATGCGCCGGCAGA
TCGACGGTGTGCATCGTGTCGCGTTCGCGCCGGTGTTTCGCCGGCTGCCCGCCGCCGGGCCGCTGATGTTCGGGCGCGGC
GTGCAGGTGGACGTGACCGTCGACGATCATGCGTTCTCCGGCGACAGCCCCTATTTGCTCGGCGCGGTGCTCGAGCAGTT
TTTCGCGCGGCACGTGTCGATCAACTCGTTCGCCGAATGCGTGCTGAGCAGCGCGCAGCGCGGCAGGCTCGCGCAATGGC
CGGCGCGCGTCGGCAGGCGGCCCGCGATATGA