Detailed information of component protein


Summary

Component ID T6CP000675
Component protein type TssG
T6SS ID (Type) T6SS00076 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS30245
Coordinate (Strand) 2836073..2837551 (-)
NCBI ID WP_004540225.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 7.4e-116 87..438
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MTTNPKPEPAGVDAGSHANSNAGRRAGAAANAEANAEPDAMPNALRGAAADVAPSAAPSATPNATPSATSQAAAARRDAWWRRLRAAPHGYDLFHALRWLDALSPEHAPSGYASRPRDEPVRFGQAPSLAFAAAMLADVRDDGPRPRVAIHGFGLFGPNGPLPSHLTEYAYERATQHDDPTFAAFADLFHHRLILLFYRAWADAQPTVSLDRPARARFDRYVASLIGPCDALLADSPRGSRPDSSFASSSDSLPDSPPDSSPDSPPDSRSDSPSDARLDPHPDSPRGAGALAPHAKYHQAGHLVRHTRNPEGLVQILRRYFGVRVRIVEHVPHWVMLDRAQRCAIRATRPTQPLGGAVLGRAVRDAQSRFRIVLGPLTLDEYRRFLPGGVHARQLAQWVREYVGIEFDWDVQLELARGEVPTLALGSRHGLGRTAWLGERLDPGPARDLVLGYDERMRASRARSGAADQAAAAGALIANLPEREPPCPISAE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.6595 - -


  Protein sequence: 493 a.a.    

>T6CP000675 NC_006351:c2837551-2836073 [Burkholderia pseudomallei K96243] [TssG]
MTTNPKPEPAGVDAGSHANSNAGRRAGAAANAEANAEPDAMPNALRGAAADVAPSAAPSATPNATPSATSQAAAARRDAW
WRRLRAAPHGYDLFHALRWLDALSPEHAPSGYASRPRDEPVRFGQAPSLAFAAAMLADVRDDGPRPRVAIHGFGLFGPNG
PLPSHLTEYAYERATQHDDPTFAAFADLFHHRLILLFYRAWADAQPTVSLDRPARARFDRYVASLIGPCDALLADSPRGS
RPDSSFASSSDSLPDSPPDSSPDSPPDSRSDSPSDARLDPHPDSPRGAGALAPHAKYHQAGHLVRHTRNPEGLVQILRRY
FGVRVRIVEHVPHWVMLDRAQRCAIRATRPTQPLGGAVLGRAVRDAQSRFRIVLGPLTLDEYRRFLPGGVHARQLAQWVR
EYVGIEFDWDVQLELARGEVPTLALGSRHGLGRTAWLGERLDPGPARDLVLGYDERMRASRARSGAADQAAAAGALIANL
PEREPPCPISAE*

  Nucleotide sequence: 1479 bp    

>T6CP000675 NC_006351:c2837551-2836073 [Burkholderia pseudomallei K96243] [TssG]
ATGACGACGAACCCGAAACCGGAGCCCGCCGGCGTGGACGCGGGCTCGCACGCGAACTCGAATGCGGGCCGGCGCGCCGG
TGCGGCCGCGAATGCGGAGGCGAACGCGGAGCCGGACGCGATGCCGAATGCGCTCCGGGGCGCGGCTGCGGATGTCGCGC
CAAGCGCGGCGCCGAGCGCGACGCCAAATGCAACGCCGAGCGCGACGTCGCAGGCCGCCGCCGCGCGCCGCGACGCATGG
TGGCGCCGCCTGCGCGCCGCGCCGCACGGCTACGACCTGTTTCATGCGCTGCGTTGGCTCGATGCGCTGTCGCCCGAGCA
CGCGCCGTCCGGCTACGCGTCGCGGCCGCGCGACGAGCCGGTGCGCTTCGGCCAGGCGCCGTCGCTCGCGTTCGCGGCCG
CGATGCTCGCCGACGTGCGTGACGACGGCCCGCGCCCGCGCGTCGCGATTCACGGCTTCGGGCTGTTCGGGCCGAACGGG
CCGCTGCCGTCGCATCTGACCGAGTACGCATACGAGCGCGCGACGCAGCATGACGATCCGACCTTCGCCGCGTTCGCCGA
CCTGTTTCATCATCGGCTGATCCTGCTGTTCTATCGCGCATGGGCCGATGCGCAGCCGACCGTCAGCCTCGATCGGCCGG
CGCGCGCGCGGTTCGACCGCTACGTGGCCAGCCTGATCGGGCCGTGCGACGCGTTGCTTGCCGATTCACCGCGCGGCTCA
CGGCCCGATTCGTCCTTCGCTTCGTCGTCCGATTCACTGCCTGATTCACCGCCTGATTCATCGCCTGATTCGCCGCCTGA
TTCGCGGTCCGATTCGCCGTCCGATGCGCGCCTCGATCCGCATCCCGACTCGCCGCGCGGCGCTGGCGCGCTCGCGCCGC
ACGCGAAGTATCACCAGGCCGGCCATCTGGTGCGGCACACGCGCAACCCGGAGGGGCTCGTGCAGATCCTGCGGCGCTAT
TTCGGTGTGCGGGTACGCATCGTCGAGCACGTGCCGCACTGGGTGATGCTCGATCGCGCGCAGCGCTGCGCGATCCGCGC
GACGCGGCCGACGCAGCCGCTCGGCGGCGCCGTGCTCGGCCGTGCGGTGCGCGACGCGCAGTCGCGCTTCCGGATCGTGC
TCGGCCCGCTGACGCTCGACGAATACCGGCGGTTCCTGCCGGGCGGCGTCCATGCGCGGCAGCTCGCGCAATGGGTGCGC
GAATACGTCGGCATCGAATTCGACTGGGACGTGCAGCTCGAGCTCGCGCGCGGCGAAGTGCCGACGCTCGCGCTCGGTAG
CCGTCACGGGCTCGGCCGCACCGCATGGCTCGGCGAGCGGCTCGACCCCGGCCCCGCGCGCGACCTCGTGCTCGGCTACG
ACGAGCGCATGCGCGCTTCGCGCGCACGATCGGGCGCGGCCGATCAGGCGGCCGCCGCCGGTGCGTTGATCGCCAACCTG
CCTGAACGGGAACCGCCATGTCCGATATCGGCCGAGTGA