Detailed information of component protein


Summary

Component ID T6CP000673
Component protein type TssI
T6SS ID (Type) T6SS00076 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (735 a.a.); Nucleotide sequence (2205 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS30235
Coordinate (Strand) 2831227..2833431 (-)
NCBI ID WP_004203275.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 4.8e-103 23..325
Phage_base_V PF04717.14 1.5e-14 381..448
Gp5_C PF06715.14 8.2e-06 556..579
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-734 VTRVFTLDSLHGDDLKFHRLYGEEALGRMFDFRIEALADNHSLSLKELLGKPVTVRIRQQDESERHLNGIVARAALVGRRAERHYGYQLIVRPWLWLATRRSDCRIFQNKTVPEIVQDVLGTYGFPIENHLTDTYAPRDYCVQYNETDAAFVSRLMEFEGIYYYFKHAAQTHTLMLCDAMASHVALPGYEHIPFIARDRTAIADEEHIDSWLPAQEVSIGKHETSDYDYTKPRADLSAQKIDPRGHDHDGFASFEWPGGYRDDEPGAHYSRVRLEEQQAEHERALARTDVRGIAPGYLFTLEHCPRADQNREYLIVRCQYRFQENAYATDSGNEAVVHESQTLVQPSSLPYRSPRATPRPRTNGPQTATVVGPKGEEIWTDQYGRVKLQFRWDRYGQSDQNSSCWVRVSSPWAGGGFGGVQIPRIGDEVVVDFLNGDPDQPIVTGRVYNGEKMPPWGLPGSATQSGLLSRSSPGGTAEHSNAFRFEDKKGAEQLWMHAERNFDAETEQDHTLSVGHDHSHSVGNNEMMSVANDRQRSVGQNETVNIGKHRVAQIGGNETHGVAGNRTRQVGQNEAVTIGANREATIGGNHVETVAKDKTETIGQGKTLNVTQHYQTTSKSMKTAVAEHHAEEIGSRTSTIEKAHELNVGGSQSVNVGASHTMSVKNNVHVGAGDQISLVCGDASITLKKDGTIAINGVTVESSASGSHSVRGKTVTSSATGEHTVEGTILKLNP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9955 - -


  Protein sequence: 735 a.a.    

>T6CP000673 NC_006351:c2833431-2831227 [Burkholderia pseudomallei K96243] [TssI]
VTRVFTLDSLHGDDLKFHRLYGEEALGRMFDFRIEALADNHSLSLKELLGKPVTVRIRQQDESERHLNGIVARAALVGRR
AERHYGYQLIVRPWLWLATRRSDCRIFQNKTVPEIVQDVLGTYGFPIENHLTDTYAPRDYCVQYNETDAAFVSRLMEFEG
IYYYFKHAAQTHTLMLCDAMASHVALPGYEHIPFIARDRTAIADEEHIDSWLPAQEVSIGKHETSDYDYTKPRADLSAQK
IDPRGHDHDGFASFEWPGGYRDDEPGAHYSRVRLEEQQAEHERALARTDVRGIAPGYLFTLEHCPRADQNREYLIVRCQY
RFQENAYATDSGNEAVVHESQTLVQPSSLPYRSPRATPRPRTNGPQTATVVGPKGEEIWTDQYGRVKLQFRWDRYGQSDQ
NSSCWVRVSSPWAGGGFGGVQIPRIGDEVVVDFLNGDPDQPIVTGRVYNGEKMPPWGLPGSATQSGLLSRSSPGGTAEHS
NAFRFEDKKGAEQLWMHAERNFDAETEQDHTLSVGHDHSHSVGNNEMMSVANDRQRSVGQNETVNIGKHRVAQIGGNETH
GVAGNRTRQVGQNEAVTIGANREATIGGNHVETVAKDKTETIGQGKTLNVTQHYQTTSKSMKTAVAEHHAEEIGSRTSTI
EKAHELNVGGSQSVNVGASHTMSVKNNVHVGAGDQISLVCGDASITLKKDGTIAINGVTVESSASGSHSVRGKTVTSSAT
GEHTVEGTILKLNP*

  Nucleotide sequence: 2205 bp    

>T6CP000673 NC_006351:c2833431-2831227 [Burkholderia pseudomallei K96243] [TssI]
GTGACCCGCGTGTTCACACTCGACAGCCTGCACGGCGACGACCTGAAGTTCCACCGGCTCTACGGCGAGGAAGCGCTCGG
GCGGATGTTCGACTTCCGGATCGAAGCGCTCGCCGACAATCACAGCCTGTCGCTGAAGGAACTGCTCGGCAAGCCGGTGA
CGGTGCGCATCCGGCAGCAGGACGAATCGGAGCGCCATCTGAACGGGATCGTCGCGCGCGCCGCGCTGGTCGGGCGGCGC
GCGGAGCGGCATTACGGCTATCAACTGATCGTGCGGCCGTGGCTGTGGCTCGCGACGCGCCGCTCCGATTGCCGGATCTT
CCAGAACAAGACGGTGCCGGAAATCGTGCAGGACGTGCTCGGCACGTACGGCTTTCCGATCGAAAACCATCTGACCGACA
CGTACGCGCCGCGCGACTACTGCGTGCAGTACAACGAGACCGACGCGGCGTTCGTGTCGCGGCTGATGGAGTTCGAAGGG
ATCTACTACTACTTCAAGCACGCCGCGCAAACGCACACGCTGATGCTGTGCGACGCGATGGCGTCGCACGTCGCGCTGCC
GGGCTACGAGCACATTCCGTTCATCGCGCGCGACCGCACCGCGATCGCCGACGAAGAGCACATCGACAGCTGGCTGCCCG
CGCAGGAAGTGAGCATCGGCAAGCACGAGACGAGCGACTACGACTACACGAAGCCGCGCGCGGATCTGTCCGCGCAGAAG
ATCGATCCGCGCGGCCACGACCATGACGGCTTCGCGTCGTTCGAATGGCCCGGCGGCTATCGCGACGATGAACCGGGCGC
GCATTACAGCCGCGTGCGGCTCGAAGAGCAGCAGGCGGAGCACGAACGCGCGCTCGCGCGCACCGACGTGCGCGGCATCG
CACCCGGCTATCTGTTCACGCTCGAACACTGCCCGCGCGCCGACCAGAACCGCGAATACCTGATCGTGCGCTGCCAGTAT
CGGTTTCAGGAGAACGCGTACGCGACCGATAGCGGCAACGAGGCGGTCGTGCACGAATCTCAGACACTCGTGCAGCCTTC
GAGCTTGCCGTATCGCTCGCCGCGCGCGACGCCGCGGCCGCGCACGAACGGCCCGCAGACGGCGACCGTCGTCGGCCCGA
AGGGCGAGGAAATCTGGACGGACCAGTACGGGCGCGTGAAGCTGCAATTTCGCTGGGACCGCTACGGGCAGAGCGACCAG
AACTCGTCGTGCTGGGTGCGCGTGTCGAGCCCGTGGGCGGGCGGCGGCTTCGGCGGCGTGCAGATCCCGCGCATCGGCGA
TGAGGTGGTGGTCGATTTCCTGAACGGCGACCCCGATCAGCCGATCGTGACGGGGCGCGTGTACAACGGCGAGAAGATGC
CGCCATGGGGGCTGCCCGGCAGCGCGACACAAAGCGGGCTGCTGTCGCGCTCGTCGCCGGGCGGCACGGCCGAGCATTCG
AACGCGTTTCGCTTCGAGGACAAGAAGGGCGCGGAGCAGCTGTGGATGCATGCGGAGCGCAACTTCGACGCGGAGACTGA
GCAGGACCACACGCTGTCGGTGGGCCACGATCATTCGCATTCGGTCGGCAACAACGAGATGATGAGCGTCGCGAACGACC
GGCAAAGGAGCGTCGGGCAGAACGAGACGGTGAACATCGGGAAACATCGCGTCGCGCAGATCGGCGGGAACGAGACGCAT
GGCGTCGCGGGAAACCGCACGCGGCAGGTCGGACAGAACGAAGCCGTGACGATCGGCGCGAATCGCGAGGCGACGATCGG
CGGCAATCACGTGGAGACGGTCGCGAAAGACAAGACCGAAACGATTGGGCAGGGCAAGACGCTGAATGTCACTCAGCACT
ATCAGACGACTTCGAAGAGCATGAAGACCGCTGTCGCCGAACATCACGCCGAGGAGATCGGCTCGCGAACGTCGACGATC
GAGAAAGCGCACGAGCTCAACGTTGGCGGTTCTCAATCGGTGAACGTTGGCGCGAGCCACACGATGAGCGTGAAGAACAA
CGTACATGTCGGCGCGGGCGATCAGATCTCGCTCGTTTGCGGCGATGCGAGCATCACGCTGAAGAAGGACGGCACGATAG
CGATCAACGGCGTCACGGTGGAATCGAGCGCCAGCGGAAGCCATAGCGTGCGCGGCAAGACAGTGACGTCGTCGGCGACG
GGCGAGCACACGGTGGAAGGCACGATACTGAAACTGAACCCCTGA