Detailed information of component protein


Summary

Component ID T6CP000661
Component protein type TssK
T6SS ID (Type) T6SS00074 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (454 a.a.); Nucleotide sequence (1362 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS21565
Coordinate (Strand) 721834..723195 (+)
NCBI ID WP_004525552.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 8e-118 21..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-453 MSSLPVGPVAWSDGMLIETQHFQQLERHLAHQASLRLGQTSNHGWGFTLLDLDQDGLGLGRLGLRHARGVFQDGTAFSLPSDDPLPPPLETELAQAGDIACLALQAARTGGPEMAFGDVELASRYRAVSTEVPDLAVGLDAPGTPRRLTIETGQLVTRLCWKSQLRSDEVALPIARVAGRNASRTVSLDPRFIPPLLDTRAHLVLRSLIDELQSTLRVRLASTSAQRVLSTGGGVADLIELLLRQAIAEYRMRLANLDAFDPLPPAMLYHELVGLLGRLSVLPGVDEELADRELGYDHDDLQTSFEPLAMMLRQALARVIETPVLPLRFEDRGDQVHICIVDKQWNLKKLIFAFSAAMPAEKLRQLLPQQTKLGAVEQIQKLVDLQLPGARLNALPNPPRQIPYYAQSTYFEVESTDPFWKQTLAGSAMALRIVGDFPDLRFEAWGLRDGKVA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9786 - -


  Protein sequence: 454 a.a.    

>T6CP000661 NC_006351:721834-723195 [Burkholderia pseudomallei K96243] [TssK]
MSSLPVGPVAWSDGMLIETQHFQQLERHLAHQASLRLGQTSNHGWGFTLLDLDQDGLGLGRLGLRHARGVFQDGTAFSLP
SDDPLPPPLETELAQAGDIACLALQAARTGGPEMAFGDVELASRYRAVSTEVPDLAVGLDAPGTPRRLTIETGQLVTRLC
WKSQLRSDEVALPIARVAGRNASRTVSLDPRFIPPLLDTRAHLVLRSLIDELQSTLRVRLASTSAQRVLSTGGGVADLIE
LLLRQAIAEYRMRLANLDAFDPLPPAMLYHELVGLLGRLSVLPGVDEELADRELGYDHDDLQTSFEPLAMMLRQALARVI
ETPVLPLRFEDRGDQVHICIVDKQWNLKKLIFAFSAAMPAEKLRQLLPQQTKLGAVEQIQKLVDLQLPGARLNALPNPPR
QIPYYAQSTYFEVESTDPFWKQTLAGSAMALRIVGDFPDLRFEAWGLRDGKVA*

  Nucleotide sequence: 1362 bp    

>T6CP000661 NC_006351:721834-723195 [Burkholderia pseudomallei K96243] [TssK]
ATGAGTAGTCTGCCGGTAGGACCGGTCGCGTGGAGCGACGGCATGCTGATCGAGACGCAGCACTTCCAGCAGCTCGAGCG
GCATCTCGCGCATCAGGCCTCGCTGCGGCTCGGTCAGACGTCGAATCACGGCTGGGGCTTCACGCTGCTCGATCTCGACC
AGGACGGCCTGGGGCTCGGCCGGCTCGGGCTGCGCCACGCGCGCGGCGTGTTCCAGGACGGCACCGCGTTCTCGCTGCCG
TCGGACGATCCGCTGCCGCCGCCGCTGGAAACCGAGCTCGCGCAGGCGGGCGACATCGCGTGCCTCGCGCTGCAGGCCGC
GCGCACGGGCGGCCCGGAGATGGCGTTCGGCGACGTCGAGCTGGCGTCGCGCTATCGCGCGGTGTCGACCGAGGTGCCGG
ATCTCGCGGTCGGGCTCGACGCGCCCGGCACGCCGCGGCGCCTGACGATCGAGACGGGCCAGCTCGTCACGCGCCTGTGC
TGGAAGTCGCAGCTGCGCTCGGACGAGGTCGCGCTGCCGATCGCGCGCGTGGCGGGGCGCAACGCGAGCCGCACGGTGTC
GCTGGATCCGCGCTTCATTCCGCCGCTGCTCGACACGCGCGCGCACCTGGTGCTGCGCTCGCTGATCGACGAGCTGCAGA
GCACGCTGCGCGTGCGGCTCGCGAGCACGTCCGCGCAGCGCGTGCTGTCGACGGGCGGGGGCGTGGCCGATCTGATCGAG
CTGCTGCTGCGCCAGGCGATCGCCGAGTACCGGATGCGCTTGGCGAACCTCGACGCGTTCGATCCGCTGCCGCCGGCGAT
GCTGTATCACGAGCTGGTCGGCCTGCTCGGGCGGCTGAGCGTGCTGCCGGGCGTCGACGAGGAACTGGCCGACCGCGAGC
TCGGCTACGACCACGACGATCTGCAGACGAGCTTCGAGCCGCTCGCGATGATGCTGCGCCAGGCGCTCGCGCGCGTGATC
GAGACGCCGGTGCTGCCGCTGCGCTTCGAGGATCGCGGCGATCAGGTGCACATCTGCATCGTCGACAAGCAGTGGAACCT
GAAGAAACTGATTTTTGCGTTTTCGGCCGCGATGCCGGCGGAGAAGCTGCGGCAACTGTTGCCGCAGCAGACGAAGCTGG
GCGCCGTCGAGCAGATCCAGAAGCTCGTGGACCTGCAACTGCCGGGCGCGCGGCTGAACGCGCTGCCCAATCCCCCGCGC
CAGATTCCCTACTACGCCCAAAGCACGTACTTCGAAGTGGAATCGACCGATCCGTTCTGGAAGCAGACCCTCGCCGGCTC
GGCGATGGCGCTGCGCATCGTCGGCGATTTCCCCGATCTTCGCTTCGAAGCCTGGGGGCTGAGAGACGGCAAGGTGGCGT
GA