Detailed information of component protein


Summary

Component ID T6CP000660
Component protein type TssI
T6SS ID (Type) T6SS00074 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (763 a.a.); Nucleotide sequence (2289 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS21535
Coordinate (Strand) 714509..716797 (+)
NCBI ID WP_004190563.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.7e-77 23..327
Phage_base_V PF04717.14 1.1e-13 380..449
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-762 MRLIELRSPLLDPDAVALSFVVHENLSQEPSYQLDLLSHDSNLDFDALLGSTLSADIDLGEGDIRTFNTHVFGGYDTGQMSGQYTYTLELRSWLSFLAENRNSRIFQDLSVPQIVEQVFQGHQRNGYRFELEGTYEPREYCVQFQETDLNFVKRLLEDEGIYFWVEHEPDRHVVVISDTQRFEDLPLPNDTLEYLPDGEESRAIQGREGVQRLQRTRRIKSNNVALRDFDYHAPSKQLDSDAQVEQQSLGGIPLEYYDYAAGYRDPEQGERLARLRLEAIQADAHALGGEANARALAVGRAFTLVGHPALSRNRRYYVTNSELTFIQDGPDSTSQGRNVAVKFRALADDQPFRPLLVTKRPRVPGIQSATVVGPEMSEVHTDKLGRIRVHFHWDRYKTTEADASCWIRVTQAWAGKGWGVLAMPRVGQEVIVVYVDGDLDRPLATGIVYNGENPTPYDLPKDIRYTGLVTRSIKRAGGIPNASQLTFDDQHGAERVMIHAERDLQQTVERNSSTSIAQDLNLSVKGTSTSVVGISVSFTGISVSYTGLSVSFTGVSARFTGVSTSFTGVSTSFTGVSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSSWKDVSMSTTGQSESITGVSLSYTGTSNSMTGTSTSVTGTSTSITGTSMSNTGSSTSITGTSMSTTGSSVSTTGSSMSATGSSVGTTGSSVSTTGSKMSVTGFSFSYTGASYEDVGVDLKKLGMQTKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9899 - -


  Protein sequence: 763 a.a.    

>T6CP000660 NC_006351:714509-716797 [Burkholderia pseudomallei K96243] [TssI]
MRLIELRSPLLDPDAVALSFVVHENLSQEPSYQLDLLSHDSNLDFDALLGSTLSADIDLGEGDIRTFNTHVFGGYDTGQM
SGQYTYTLELRSWLSFLAENRNSRIFQDLSVPQIVEQVFQGHQRNGYRFELEGTYEPREYCVQFQETDLNFVKRLLEDEG
IYFWVEHEPDRHVVVISDTQRFEDLPLPNDTLEYLPDGEESRAIQGREGVQRLQRTRRIKSNNVALRDFDYHAPSKQLDS
DAQVEQQSLGGIPLEYYDYAAGYRDPEQGERLARLRLEAIQADAHALGGEANARALAVGRAFTLVGHPALSRNRRYYVTN
SELTFIQDGPDSTSQGRNVAVKFRALADDQPFRPLLVTKRPRVPGIQSATVVGPEMSEVHTDKLGRIRVHFHWDRYKTTE
ADASCWIRVTQAWAGKGWGVLAMPRVGQEVIVVYVDGDLDRPLATGIVYNGENPTPYDLPKDIRYTGLVTRSIKRAGGIP
NASQLTFDDQHGAERVMIHAERDLQQTVERNSSTSIAQDLNLSVKGTSTSVVGISVSFTGISVSYTGLSVSFTGVSARFT
GVSTSFTGVSTSFTGVSTSFTGVDTSFTGVSTGFKGVDTSFTGVATSMVGVSTSITGSSNSVTGVSNSMTGISSSWKDVS
MSTTGQSESITGVSLSYTGTSNSMTGTSTSVTGTSTSITGTSMSNTGSSTSITGTSMSTTGSSVSTTGSSMSATGSSVGT
TGSSVSTTGSKMSVTGFSFSYTGASYEDVGVDLKKLGMQTKN*

  Nucleotide sequence: 2289 bp    

>T6CP000660 NC_006351:714509-716797 [Burkholderia pseudomallei K96243] [TssI]
ATGCGTCTGATCGAACTGCGCAGTCCCCTGCTGGACCCGGACGCCGTCGCGCTGAGCTTCGTGGTGCATGAGAACCTGTC
GCAGGAGCCGTCGTATCAGCTCGATCTGCTGAGCCACGATTCGAATCTGGACTTCGACGCGCTGCTCGGCTCGACGCTGT
CGGCCGACATCGACCTGGGCGAAGGCGACATCCGGACGTTCAACACGCACGTGTTCGGCGGCTACGACACGGGGCAGATG
AGCGGGCAATACACGTACACGCTGGAGCTGCGAAGCTGGTTGTCGTTTCTCGCTGAGAACCGCAACAGCCGGATCTTCCA
GGATTTGAGCGTGCCGCAGATCGTCGAGCAGGTGTTCCAGGGCCATCAGCGCAACGGCTACCGGTTCGAGCTCGAAGGCA
CGTACGAGCCGCGCGAGTACTGCGTGCAGTTCCAGGAAACGGATCTGAACTTCGTGAAGCGGCTGCTGGAGGACGAAGGG
ATCTACTTCTGGGTGGAGCACGAGCCGGACCGTCATGTGGTGGTGATCTCGGACACGCAGCGGTTCGAGGATCTGCCGCT
GCCGAACGACACGCTGGAGTATCTGCCGGACGGCGAGGAGTCGCGCGCGATCCAGGGGCGCGAAGGGGTGCAGCGGCTGC
AGCGCACGCGGCGGATCAAGTCGAACAACGTCGCGCTGCGGGATTTCGACTATCACGCGCCGTCGAAGCAACTGGACAGC
GACGCGCAGGTCGAGCAGCAGAGTCTCGGCGGCATTCCGCTCGAGTACTACGACTACGCGGCCGGCTACCGCGACCCCGA
GCAGGGCGAGCGCCTCGCGCGGCTGCGGCTCGAAGCGATTCAGGCTGATGCACACGCGCTCGGGGGCGAGGCGAACGCAC
GCGCGCTGGCGGTGGGTCGCGCGTTCACGCTGGTCGGCCATCCGGCGCTGAGCCGCAATCGTCGGTACTACGTGACGAAC
AGCGAGCTGACGTTCATCCAGGACGGACCGGACAGCACGTCGCAGGGGCGCAACGTCGCGGTGAAGTTCCGCGCGCTCGC
CGACGATCAGCCGTTTCGGCCGCTGCTCGTCACCAAGCGGCCGCGCGTGCCGGGCATCCAGAGCGCGACGGTGGTGGGCC
CGGAGATGTCGGAGGTGCATACCGACAAGCTCGGGCGGATTCGCGTGCACTTCCACTGGGACCGCTACAAGACGACCGAG
GCGGACGCGTCGTGCTGGATTCGCGTGACGCAGGCATGGGCGGGCAAGGGCTGGGGTGTGCTCGCGATGCCGCGGGTCGG
GCAGGAAGTCATCGTCGTGTATGTCGACGGCGATCTCGACCGGCCGCTCGCGACGGGCATCGTCTACAACGGCGAAAACC
CGACGCCTTATGACCTGCCGAAGGATATCCGCTACACGGGCCTCGTCACACGCTCGATCAAGCGGGCGGGCGGCATTCCG
AATGCGAGCCAACTGACGTTCGACGATCAGCACGGCGCGGAGCGCGTGATGATCCACGCGGAGCGCGACTTGCAGCAGAC
GGTCGAGCGCAACAGCTCGACGTCGATCGCGCAGGATCTGAACCTGTCGGTGAAGGGCACGTCGACGTCGGTCGTCGGCA
TCTCGGTCAGCTTCACGGGCATCTCGGTGTCGTACACGGGGTTGTCGGTGAGCTTCACCGGCGTGTCGGCGAGGTTCACG
GGCGTGAGCACGTCGTTTACCGGCGTGAGCACGAGTTTCACCGGCGTGTCGACGTCGTTTACCGGCGTCGATACCAGCTT
CACCGGCGTCTCGACCGGATTCAAGGGCGTCGACACGAGCTTCACCGGCGTCGCGACGTCGATGGTGGGCGTGTCGACGA
GCATCACGGGCTCCAGCAATTCCGTGACGGGCGTGTCGAACAGCATGACGGGCATCTCGTCTTCCTGGAAGGACGTGAGC
ATGTCGACGACCGGCCAGTCCGAAAGCATCACGGGAGTATCGCTGTCGTACACGGGCACGTCGAACAGCATGACGGGCAC
GAGCACGTCGGTGACGGGCACCTCGACGAGCATCACCGGCACGTCGATGTCGAACACCGGCAGCTCGACGAGCATCACGG
GCACATCGATGTCGACGACGGGCAGCTCGGTGAGCACGACGGGCTCGAGCATGTCGGCCACCGGCAGTTCGGTGGGCACG
ACGGGCTCGAGCGTATCGACGACGGGAAGCAAGATGTCGGTCACCGGCTTCAGCTTCTCGTATACGGGAGCGAGCTACGA
GGATGTGGGCGTCGATCTGAAAAAGCTCGGGATGCAGACGAAGAACTGA