Detailed information of component protein


Summary

Component ID T6CP000659
Component protein type TssI
T6SS ID (Type) T6SS00074 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (764 a.a.); Nucleotide sequence (2292 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS21530
Coordinate (Strand) 712052..714343 (+)
NCBI ID WP_004535244.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 8.2e-78 23..328
Phage_base_V PF04717.14 1.9e-14 381..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-763 MRLIELRSPLLDPDAVALSFVVHENLSQEPSYQLDLLSHDPDLDFDALLGSTLSADIDLGEGDIRTFNTHVFGGYDTGQMSGQYTYTLELRSWLSFLAENRNSRIFQNMSVPQIVEQVFQGHQRNGYRFELEGTYEPREYCVQFQETDLNFVKRLLEDEGIYFWVEHEPDRHVVVISDTQRFEDLPLPNDTLEYLPDGEESRAIQGREGVQRLQRTRRIKSNNVALRDFDYHAPSNKLDSDAQQVSPPNLEGIPLEYYDYAAGYREPEQGERLARLRLEAIQAESHTLVGEANARALATGRAFTLIGHPALGRNRRYYVTNSELTFIQDGPDSTSQGRNVAVKFRALADDQPFRPLLTTPRPEVPGIQSATVVGPEMSEVHTDKLGRIRVHFHWDRYKTTEADASCWIRVSQAWAGKGWGVIAMPRVGQEVLVTYVDGDLDRPLVTGIVYNGENPTPYDLPKDIRYTGLVSRSIKRAGGYQNASQITFDDQRGAERVMIHAERDMQQTVERNSSTSIAQDLNLSVKGTSTSVVGISISFTGISVSYTGLSVSFTGVSASFTGLSTSFTGVSTSFTGVSTSFTGVDTSFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNSMTGISSSWTDVSMSTTGQSQSITGVSLSYTGTSNSMTGTSTSVTGTSTSITGTSMSNTGSSTSITGTSMSTTGSSTSVTGSSVSTTGSSVSTTGSSVSTTGSSVSTTGFSFSYTGVSYSDTGIDLKKVGMQVKS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9905 - -


  Protein sequence: 764 a.a.    

>T6CP000659 NC_006351:712052-714343 [Burkholderia pseudomallei K96243] [TssI]
MRLIELRSPLLDPDAVALSFVVHENLSQEPSYQLDLLSHDPDLDFDALLGSTLSADIDLGEGDIRTFNTHVFGGYDTGQM
SGQYTYTLELRSWLSFLAENRNSRIFQNMSVPQIVEQVFQGHQRNGYRFELEGTYEPREYCVQFQETDLNFVKRLLEDEG
IYFWVEHEPDRHVVVISDTQRFEDLPLPNDTLEYLPDGEESRAIQGREGVQRLQRTRRIKSNNVALRDFDYHAPSNKLDS
DAQQVSPPNLEGIPLEYYDYAAGYREPEQGERLARLRLEAIQAESHTLVGEANARALATGRAFTLIGHPALGRNRRYYVT
NSELTFIQDGPDSTSQGRNVAVKFRALADDQPFRPLLTTPRPEVPGIQSATVVGPEMSEVHTDKLGRIRVHFHWDRYKTT
EADASCWIRVSQAWAGKGWGVIAMPRVGQEVLVTYVDGDLDRPLVTGIVYNGENPTPYDLPKDIRYTGLVSRSIKRAGGY
QNASQITFDDQRGAERVMIHAERDMQQTVERNSSTSIAQDLNLSVKGTSTSVVGISISFTGISVSYTGLSVSFTGVSASF
TGLSTSFTGVSTSFTGVSTSFTGVDTSFKGVSTSFTGVDTSFKGVSTSFTGVSTSLTGSSNSVTGVSNSMTGISSSWTDV
SMSTTGQSQSITGVSLSYTGTSNSMTGTSTSVTGTSTSITGTSMSNTGSSTSITGTSMSTTGSSTSVTGSSVSTTGSSVS
TTGSSVSTTGSSVSTTGFSFSYTGVSYSDTGIDLKKVGMQVKS*

  Nucleotide sequence: 2292 bp    

>T6CP000659 NC_006351:712052-714343 [Burkholderia pseudomallei K96243] [TssI]
ATGCGTCTGATCGAACTGCGCAGTCCCCTGCTGGACCCGGATGCGGTGGCGCTGAGCTTCGTGGTGCACGAGAACCTGTC
GCAGGAGCCGTCGTATCAACTGGATCTGCTGAGCCACGATCCGGATCTGGACTTCGACGCGCTGCTCGGCTCGACGCTGT
CGGCCGACATCGACCTGGGCGAAGGCGACATCCGGACGTTCAACACGCACGTGTTCGGCGGCTACGACACGGGGCAGATG
AGCGGGCAATACACGTACACGCTGGAGCTGCGAAGCTGGCTGTCGTTTCTCGCGGAGAACCGCAACAGCCGGATCTTCCA
GAACATGAGCGTGCCGCAGATCGTCGAGCAGGTGTTCCAGGGCCATCAGCGCAACGGCTACCGGTTCGAGCTCGAAGGTA
CGTACGAGCCGCGCGAGTACTGCGTGCAGTTTCAGGAAACGGATCTGAACTTCGTGAAGCGGCTGCTGGAGGACGAAGGG
ATCTACTTCTGGGTGGAGCACGAGCCGGATCGTCATGTGGTGGTGATCTCGGACACGCAGCGGTTCGAGGATCTGCCGCT
GCCGAACGACACGCTGGAGTATCTGCCGGACGGCGAGGAGTCGCGCGCGATCCAGGGGCGCGAAGGGGTGCAGCGGCTGC
AGCGCACGCGGCGGATCAAGTCGAACAACGTCGCGCTGCGGGATTTCGACTATCACGCGCCGTCGAACAAGCTCGACAGC
GACGCGCAGCAGGTGTCGCCGCCGAACCTCGAGGGGATTCCGCTCGAGTATTACGACTATGCGGCGGGCTACCGCGAGCC
CGAGCAGGGCGAGCGTCTCGCGCGGCTGCGGCTCGAGGCGATTCAGGCGGAATCACACACGCTGGTGGGCGAGGCGAACG
CGCGCGCGCTGGCCACGGGCCGGGCGTTCACGTTGATCGGGCATCCGGCGTTGGGGCGCAATCGTCGGTACTACGTGACG
AACAGCGAGCTGACGTTCATCCAGGACGGACCGGACAGCACGTCGCAGGGGCGCAACGTCGCGGTGAAGTTCCGCGCGCT
TGCCGACGATCAGCCGTTTCGGCCGCTGTTGACGACGCCGCGTCCCGAAGTGCCGGGCATCCAGAGCGCGACGGTGGTGG
GTCCGGAGATGTCGGAAGTGCATACCGACAAGCTCGGGCGGATTCGCGTGCATTTCCATTGGGACCGCTACAAGACGACC
GAGGCGGATGCGTCGTGCTGGATACGCGTGTCGCAGGCATGGGCGGGCAAGGGCTGGGGCGTGATCGCGATGCCGCGGGT
CGGGCAGGAAGTGCTCGTCACGTATGTCGACGGCGATCTCGATCGGCCGCTCGTGACGGGCATCGTCTACAACGGCGAGA
ACCCGACGCCTTATGACTTGCCGAAGGACATCCGCTACACGGGGCTGGTGTCGCGTTCGATCAAGCGTGCGGGCGGTTAT
CAGAACGCGAGTCAGATCACGTTCGATGACCAGCGCGGCGCGGAGCGCGTGATGATCCACGCGGAGCGCGACATGCAGCA
GACGGTCGAGCGCAACAGCTCGACGTCGATCGCGCAGGATCTGAACCTGTCGGTGAAGGGCACGTCGACGTCGGTCGTCG
GCATCTCGATCAGCTTCACGGGCATCTCGGTGTCGTACACGGGGTTGTCGGTGAGCTTCACCGGCGTGTCGGCGAGCTTC
ACGGGCTTGAGCACGTCGTTTACCGGCGTGAGCACGAGTTTCACCGGCGTGTCGACGTCGTTTACCGGCGTCGACACCAG
CTTCAAGGGCGTGTCGACGTCGTTTACCGGTGTCGATACCAGCTTCAAGGGGGTGTCGACTTCGTTCACGGGCGTAAGCA
CGAGCCTCACCGGTTCGAGCAACTCGGTGACGGGCGTATCGAACAGCATGACGGGCATTTCGTCATCATGGACCGACGTC
AGCATGTCGACGACCGGCCAATCCCAAAGCATCACGGGGGTATCGCTGTCGTACACGGGCACGTCGAACAGCATGACGGG
CACGAGCACGTCGGTGACGGGCACCTCGACGAGCATCACCGGCACGTCGATGTCGAACACCGGCAGCTCGACGAGCATCA
CGGGCACGTCGATGTCGACGACGGGCAGCTCGACGAGCGTCACCGGCTCGAGCGTATCGACGACCGGCAGCTCGGTGAGC
ACGACGGGCTCGAGCGTGTCGACAACGGGCAGCAGCGTGTCGACGACAGGTTTCAGCTTCTCGTACACCGGCGTCAGTTA
TTCGGACACCGGTATTGACCTGAAGAAGGTCGGCATGCAAGTGAAGAGCTGA