Detailed information of component protein


Summary

Component ID T6CP000658
Component protein type TssH
T6SS ID (Type) T6SS00074 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (957 a.a.); Nucleotide sequence (2871 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS21525
Coordinate (Strand) 709191..712061 (+)
NCBI ID WP_004525547.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.4e-33 597..763
AAA_lid_9 PF17871.3 4.7e-26 368..449
AAA PF00004.31 6.2e-08 228..333
ClpB_D2-small PF10431.11 1.8e-06 769..842
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-956 VNRERIFNCLGRTTYAALVDATALGRSRRHAFIDLDHWALCLLQREQSDLARLFELFGSDAGEAKRRMEKALDGFDVSGDSLRDISSSLERSVGPAVIWSQIAARAGKVRSGHLLLAWLDEDLTRRWLQQRVPSGITSVALDDVVKRYEALAAGWPEADEAPAALDGAALGAQAGEAGADGTGDALAKWATCVTEQAARGELDPVVGRDDELRTVIDILSRRRQNNPILVGEAGVGKTAVVEALAQKIHAGAVPPGLVGAQVWALDLARMQAGAGVRGEFEQRLKSLIDAVIASPAPIILFCDETHTLIGAGGAAGTGDAANLIKPMLARGQLRMVAATTWSEYKQYIEPDAALVRRFQAVAVDEPSDDAAVDMLRTIAPRFAAHHGVRIVDSALRGAVELSRRYLPARQLPDKAISLLDTACARVAMSQSCAPAELERLQHQAFAIGQTLDWRASDRRMGVRTPGDEAELEGRQASLAQQAATLETVVDAQRDEVRAWLARLNDATPQAADGDGAAFAARIGANRWVRPWVDEHVVSEVLAEWTGVPVAQLAQDDAQRVVELEAALNAGIHGQTGAMRSIAQALQVSHSGLNDPRRPLGVMLLAGPTGTGKSQAAAKLAELLFGGERNLLQFNMNEFQEAHTVSTLKGAPPGYVGYGKGGRLTEAVRKKPYSVLLLDEFDRAHPDIHEVFYQVFDQGWMEDGEGRRISFRNCLILLTSNLGEAEIEAACKADPRISQAKLDKLVGERLQGRFSPALLARIQLVAFRTLDVDALTGIATQALDELGERLAQNDLQWRADEGVASWIAHAVSQHPANGRAVRDLLRQHVMPAVARGVLAARAEGRALKTVRLAANEKLSLVFDEDAWELSGTDAASLGEQAQAVAMAREAEAVAAAVAAREAHGAHGTNEADGGGGAPHAAKADAHVDSDDERPGGAPHPDETASANAGTTGEPSCV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9375 - -


  Protein sequence: 957 a.a.    

>T6CP000658 NC_006351:709191-712061 [Burkholderia pseudomallei K96243] [TssH]
VNRERIFNCLGRTTYAALVDATALGRSRRHAFIDLDHWALCLLQREQSDLARLFELFGSDAGEAKRRMEKALDGFDVSGD
SLRDISSSLERSVGPAVIWSQIAARAGKVRSGHLLLAWLDEDLTRRWLQQRVPSGITSVALDDVVKRYEALAAGWPEADE
APAALDGAALGAQAGEAGADGTGDALAKWATCVTEQAARGELDPVVGRDDELRTVIDILSRRRQNNPILVGEAGVGKTAV
VEALAQKIHAGAVPPGLVGAQVWALDLARMQAGAGVRGEFEQRLKSLIDAVIASPAPIILFCDETHTLIGAGGAAGTGDA
ANLIKPMLARGQLRMVAATTWSEYKQYIEPDAALVRRFQAVAVDEPSDDAAVDMLRTIAPRFAAHHGVRIVDSALRGAVE
LSRRYLPARQLPDKAISLLDTACARVAMSQSCAPAELERLQHQAFAIGQTLDWRASDRRMGVRTPGDEAELEGRQASLAQ
QAATLETVVDAQRDEVRAWLARLNDATPQAADGDGAAFAARIGANRWVRPWVDEHVVSEVLAEWTGVPVAQLAQDDAQRV
VELEAALNAGIHGQTGAMRSIAQALQVSHSGLNDPRRPLGVMLLAGPTGTGKSQAAAKLAELLFGGERNLLQFNMNEFQE
AHTVSTLKGAPPGYVGYGKGGRLTEAVRKKPYSVLLLDEFDRAHPDIHEVFYQVFDQGWMEDGEGRRISFRNCLILLTSN
LGEAEIEAACKADPRISQAKLDKLVGERLQGRFSPALLARIQLVAFRTLDVDALTGIATQALDELGERLAQNDLQWRADE
GVASWIAHAVSQHPANGRAVRDLLRQHVMPAVARGVLAARAEGRALKTVRLAANEKLSLVFDEDAWELSGTDAASLGEQA
QAVAMAREAEAVAAAVAAREAHGAHGTNEADGGGGAPHAAKADAHVDSDDERPGGAPHPDETASANAGTTGEPSCV*

  Nucleotide sequence: 2871 bp    

>T6CP000658 NC_006351:709191-712061 [Burkholderia pseudomallei K96243] [TssH]
GTGAATCGCGAACGCATATTCAACTGTCTCGGCCGCACGACCTATGCGGCCCTTGTCGATGCGACGGCGCTGGGCCGATC
GCGTCGGCACGCCTTCATCGATCTCGATCACTGGGCGCTGTGCCTGCTGCAGCGCGAGCAGAGCGATCTCGCGCGGCTGT
TCGAACTGTTCGGCAGCGATGCCGGCGAAGCGAAGCGCCGCATGGAGAAGGCGCTCGACGGCTTCGACGTGAGCGGCGAC
TCGCTGCGCGACATCTCCAGCTCGCTGGAGCGCAGCGTGGGGCCGGCCGTCATCTGGAGCCAGATCGCGGCGCGCGCGGG
CAAGGTGCGCTCCGGCCACCTGCTGCTCGCGTGGCTCGACGAGGATCTGACGCGCCGCTGGCTGCAGCAGCGCGTGCCGA
GCGGCATCACGTCGGTGGCGCTCGACGACGTGGTGAAGCGCTATGAGGCGCTCGCGGCGGGCTGGCCGGAGGCCGACGAG
GCGCCGGCCGCGCTGGACGGCGCGGCGCTGGGCGCGCAGGCGGGCGAAGCCGGCGCAGACGGCACGGGCGACGCGCTCGC
GAAGTGGGCGACGTGCGTGACGGAGCAGGCCGCGCGCGGCGAGCTCGATCCGGTGGTGGGGCGCGACGACGAATTGCGCA
CGGTGATCGACATTCTGTCGCGCCGCCGGCAGAACAACCCGATCCTCGTGGGCGAGGCGGGGGTGGGCAAGACGGCCGTG
GTCGAGGCGCTCGCGCAGAAGATCCACGCGGGCGCGGTGCCGCCGGGGCTCGTGGGCGCGCAGGTGTGGGCGCTCGACCT
GGCGCGGATGCAGGCGGGCGCGGGGGTGCGCGGCGAGTTCGAGCAGCGCCTGAAATCGCTGATCGACGCGGTGATCGCCT
CGCCCGCGCCGATCATCCTGTTCTGCGACGAGACGCACACGCTGATCGGCGCGGGCGGCGCGGCGGGCACGGGCGACGCG
GCCAACCTGATCAAGCCGATGCTCGCGCGCGGCCAATTGAGGATGGTCGCGGCGACGACGTGGTCCGAATACAAGCAGTA
CATCGAGCCGGACGCGGCGCTCGTGCGGCGCTTCCAGGCGGTCGCGGTCGACGAACCGAGCGACGATGCGGCGGTCGACA
TGCTGCGCACGATCGCGCCGCGCTTTGCCGCGCACCACGGCGTGCGCATCGTCGATTCGGCGCTGCGCGGCGCGGTCGAG
CTGTCGCGCCGCTATCTGCCCGCGCGGCAGTTGCCGGACAAGGCGATCAGCCTGCTCGACACCGCGTGCGCGCGCGTGGC
GATGAGCCAGAGCTGCGCGCCCGCGGAGCTCGAGCGCTTGCAGCACCAGGCGTTCGCGATCGGCCAGACGCTCGATTGGC
GCGCGAGCGACCGGCGCATGGGCGTGCGCACGCCGGGCGACGAAGCCGAGCTCGAAGGCCGTCAGGCGAGCCTCGCGCAG
CAGGCGGCGACGCTCGAGACGGTCGTGGACGCGCAGCGCGACGAGGTGCGTGCGTGGCTCGCGCGGCTGAACGACGCCAC
GCCGCAGGCGGCCGACGGCGACGGCGCTGCGTTCGCCGCGCGCATCGGCGCGAATCGCTGGGTGCGGCCATGGGTCGACG
AACACGTGGTGTCGGAGGTGCTCGCCGAATGGACGGGGGTGCCCGTCGCGCAGCTCGCGCAGGACGACGCGCAGCGCGTG
GTGGAGCTCGAGGCGGCATTGAACGCGGGCATCCACGGGCAGACGGGCGCGATGCGCTCGATCGCGCAGGCGCTGCAGGT
GTCGCACTCGGGGCTGAACGATCCGCGCCGCCCGCTCGGCGTGATGCTGCTCGCGGGGCCGACGGGCACGGGCAAGAGCC
AGGCGGCCGCGAAGCTCGCCGAGCTGCTGTTCGGCGGCGAGCGCAACCTGCTGCAGTTCAACATGAACGAGTTCCAGGAA
GCGCACACGGTGTCGACGCTCAAGGGCGCGCCGCCGGGGTACGTCGGCTACGGCAAGGGCGGTCGGCTGACCGAGGCGGT
GCGCAAGAAGCCGTACAGCGTGCTGCTGCTGGACGAATTCGATCGCGCGCATCCGGACATTCATGAGGTGTTCTATCAAG
TCTTCGATCAGGGGTGGATGGAGGACGGCGAAGGTCGCCGGATCAGCTTCCGCAACTGCCTGATCCTGCTGACGAGCAAT
CTGGGGGAGGCGGAGATCGAAGCGGCGTGCAAGGCCGATCCGCGGATCTCGCAGGCGAAGCTCGACAAGCTGGTGGGCGA
GCGGCTGCAGGGGCGTTTCTCGCCGGCGCTGCTCGCGCGGATTCAGCTCGTGGCGTTCCGCACGCTCGATGTCGACGCGT
TGACGGGCATCGCGACGCAGGCGCTGGACGAGCTGGGCGAGCGCCTGGCGCAGAACGATCTGCAATGGCGCGCGGACGAA
GGCGTGGCGTCGTGGATCGCGCATGCGGTGTCGCAGCATCCGGCGAACGGACGCGCGGTGCGCGACCTGTTGCGCCAGCA
CGTGATGCCGGCCGTGGCGCGCGGCGTGCTCGCCGCGCGTGCGGAAGGGCGAGCGCTGAAGACGGTGCGGCTCGCGGCGA
ACGAGAAGCTGTCGCTCGTGTTCGACGAGGACGCGTGGGAGCTGAGCGGCACCGATGCGGCGTCGCTCGGCGAGCAGGCG
CAGGCGGTGGCGATGGCGCGCGAGGCGGAGGCGGTGGCCGCTGCCGTGGCGGCACGCGAAGCGCACGGCGCGCACGGCAC
GAATGAGGCGGATGGAGGCGGCGGCGCGCCGCACGCGGCGAAAGCCGACGCGCATGTCGATTCGGATGACGAACGTCCAG
GCGGCGCGCCTCATCCCGATGAAACGGCTTCGGCGAACGCCGGCACGACGGGAGAACCGTCATGCGTCTGA