Detailed information of component protein


Summary

Component ID T6CP000656
Component protein type TssF
T6SS ID (Type) T6SS00074 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (621 a.a.); Nucleotide sequence (1863 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS21515
Coordinate (Strand) 706340..708202 (+)
NCBI ID WP_004196180.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.5e-109 2..606
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-620 MNFLDHYNDELRQLRDAGARFSKEHPQVASALGLHPDAVTDPFVERLLEGVAYLSARVQKRLDRECAEFAQQALGRICPLYTASTPAISTFAFHPDLGSPDAFRGNTLPRGSLIAAHLPGRKLPVMFSTAREVTLLPLRLASVECSRSITGLPSLLAQRLASSHAVLRFRFEIEGGASIAELAREDDGFKPLHLSVAGDLPRAYALHRALLADTTAWYALVSTNRGDEVLPLPMSGIRLSGVDDEEALLPEAFGGLPGLRLLREYFAQPTRLLGVYVDALAAIAAKAPSARAFDLFFALRDAPGDLVGDVDASQFRLFATPAINLYSKRFDPVPYDANQPEQWIPVDRMRPAAHHLWALTEVFVCETNGRAHRARSVLETAGYEGHEGSIRYGMRREDALLVDGVRRDRFDPLASHDLIAVSMVDDTLEPDDVATITGRALVADRDWRPSALLDAELQLLDPTAVKRIECLWPASAPRGKPSIDACWEAVSHVGRNPLALRASQQQDVTARIVEQLLLAIDKDDALDRQRLESLRSVVLRSRFVAAGRATPTALVRATQVEIDIAESLHADRGGWLFGRLLAQALAEAATLNDGIEIVVRLDGEAASTHTNVATRDGRLA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9892 - -


  Protein sequence: 621 a.a.    

>T6CP000656 NC_006351:706340-708202 [Burkholderia pseudomallei K96243] [TssF]
MNFLDHYNDELRQLRDAGARFSKEHPQVASALGLHPDAVTDPFVERLLEGVAYLSARVQKRLDRECAEFAQQALGRICPL
YTASTPAISTFAFHPDLGSPDAFRGNTLPRGSLIAAHLPGRKLPVMFSTAREVTLLPLRLASVECSRSITGLPSLLAQRL
ASSHAVLRFRFEIEGGASIAELAREDDGFKPLHLSVAGDLPRAYALHRALLADTTAWYALVSTNRGDEVLPLPMSGIRLS
GVDDEEALLPEAFGGLPGLRLLREYFAQPTRLLGVYVDALAAIAAKAPSARAFDLFFALRDAPGDLVGDVDASQFRLFAT
PAINLYSKRFDPVPYDANQPEQWIPVDRMRPAAHHLWALTEVFVCETNGRAHRARSVLETAGYEGHEGSIRYGMRREDAL
LVDGVRRDRFDPLASHDLIAVSMVDDTLEPDDVATITGRALVADRDWRPSALLDAELQLLDPTAVKRIECLWPASAPRGK
PSIDACWEAVSHVGRNPLALRASQQQDVTARIVEQLLLAIDKDDALDRQRLESLRSVVLRSRFVAAGRATPTALVRATQV
EIDIAESLHADRGGWLFGRLLAQALAEAATLNDGIEIVVRLDGEAASTHTNVATRDGRLA*

  Nucleotide sequence: 1863 bp    

>T6CP000656 NC_006351:706340-708202 [Burkholderia pseudomallei K96243] [TssF]
ATGAACTTCCTCGATCACTACAACGACGAATTGCGCCAGTTGCGCGATGCGGGCGCACGCTTCTCCAAGGAGCACCCGCA
GGTGGCCTCCGCGCTCGGGCTGCATCCGGATGCGGTCACCGATCCGTTCGTCGAGCGCCTGCTCGAGGGCGTCGCGTACC
TGTCGGCGCGCGTGCAGAAGCGGCTCGATCGCGAGTGCGCGGAGTTCGCGCAGCAGGCGCTCGGGCGCATCTGCCCGCTC
TACACGGCTTCCACGCCCGCGATCTCGACGTTCGCGTTCCATCCCGATCTCGGCTCGCCCGATGCGTTTCGCGGCAACAC
GCTGCCGCGCGGCTCGCTCATCGCCGCGCACCTGCCCGGGCGCAAGCTGCCGGTGATGTTCTCGACCGCGCGCGAGGTCA
CGCTGCTGCCGCTGCGTCTCGCATCGGTCGAGTGCAGCCGCAGCATCACCGGGCTGCCGTCGCTGCTCGCGCAGCGGCTC
GCCTCGTCGCACGCGGTGCTGCGCTTCAGGTTCGAGATCGAGGGCGGCGCGTCGATCGCGGAGCTCGCGCGCGAGGACGA
CGGCTTCAAGCCGCTGCATCTGAGCGTGGCGGGCGATCTGCCGCGCGCATATGCGCTGCACCGCGCGCTGCTCGCCGACA
CCACCGCGTGGTACGCGCTCGTGTCGACGAACCGCGGTGACGAGGTGCTGCCGTTGCCGATGTCGGGCATCCGGCTGTCC
GGCGTCGACGACGAGGAGGCGCTGCTGCCCGAGGCGTTCGGCGGGCTGCCCGGCCTGCGGCTGCTGCGCGAGTACTTCGC
GCAGCCCACGCGGCTGCTCGGCGTCTACGTCGACGCGCTGGCGGCGATCGCCGCGAAGGCGCCGTCCGCGCGCGCGTTCG
ATCTGTTCTTCGCGTTGCGCGACGCGCCGGGCGATCTGGTGGGCGACGTCGACGCGAGCCAGTTCCGCCTGTTCGCGACG
CCGGCGATCAATCTGTATTCCAAACGTTTCGACCCGGTGCCGTACGACGCGAATCAGCCCGAGCAGTGGATTCCCGTCGA
CCGGATGCGGCCCGCCGCGCATCACCTGTGGGCGCTCACCGAGGTGTTCGTGTGCGAGACCAACGGTCGCGCACACCGCG
CGCGCTCGGTGCTCGAGACGGCGGGCTACGAAGGGCACGAAGGCTCGATCCGCTACGGCATGCGGCGCGAGGACGCGCTG
CTCGTCGACGGCGTGCGGCGCGACCGGTTCGATCCGCTCGCGAGCCACGACCTGATCGCCGTCTCGATGGTCGACGACAC
GCTCGAGCCGGACGACGTCGCGACGATCACGGGCCGCGCGCTCGTGGCCGATCGCGACTGGCGCCCGAGCGCTCTGCTCG
ACGCCGAGCTGCAACTGCTCGATCCGACCGCGGTCAAGCGCATCGAGTGCCTGTGGCCGGCGAGCGCGCCGCGCGGCAAG
CCGAGCATCGACGCGTGCTGGGAGGCGGTCTCGCACGTCGGGCGCAACCCGCTCGCGCTGCGCGCGTCGCAGCAGCAGGA
CGTGACGGCGCGCATCGTCGAGCAGTTGCTGCTCGCGATCGACAAGGACGACGCGCTCGATCGCCAGCGGCTCGAGAGCC
TGCGCTCGGTCGTGCTGCGCTCGCGCTTCGTCGCGGCGGGGCGCGCCACGCCCACCGCGCTGGTGCGCGCGACACAGGTG
GAGATCGACATCGCCGAATCGCTGCACGCCGATCGCGGCGGCTGGCTGTTCGGGCGGCTGCTCGCGCAGGCGCTCGCGGA
GGCCGCCACGCTCAACGACGGCATCGAGATCGTGGTGCGCCTGGACGGCGAAGCGGCGAGCACGCACACGAACGTCGCCA
CGCGCGACGGGAGGCTCGCATGA