Detailed information of component protein


Summary

Component ID T6CP000653
Component protein type TssC
T6SS ID (Type) T6SS00074 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (502 a.a.); Nucleotide sequence (1506 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS21500
Coordinate (Strand) 703639..705144 (+)
NCBI ID WP_004190846.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.1e-127 69..371
VipB_2 PF18945.2 1.4e-43 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-501 MQQLESSAEKVVVDQNNVNEDLKDILRRSFRPRTNEAAEAVQNAVETLLTYARRSRVVVREDVAQTIEQLVAELDKKISEQLTLVLHNKRFQSLEGAWRGLHYLVSNTDTSENLKIRYLNISKADLGKTLRRFKGVVWDQSPIFKMIYEQEYGQFGGEPFGCLIGDFYFDHSMQDVSILTEMSKISAAAHAPFIAAAAPGLLQMDDWSELSNPRDVSKIFTATEYAFWRRLRESNDSRYLALTLPRFLARVPYGPKTQPVEEFGFEEKVDPNRAEDFCWANSAYAMGANITRAFKTYGWCTKIRGVESGGAVEVLPKFVLPSQDREVDLHCPTEIAISDRREHELSESGLMPLVYRKNSDTAAFIGAKTVHRPAIYEDDDATANSNLSSRLPYIFATCRFAHYLKCIVRDKIGSFKSAEDTQRWLNDWLMNYVDGDPSISSEVTKSQRPLSAAEVVVDEIPENPGYYRAQFFLRPHFQLEGLTVSLRLVSKLPSTKHEVTT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9912 - -


  Protein sequence: 502 a.a.    

>T6CP000653 NC_006351:703639-705144 [Burkholderia pseudomallei K96243] [TssC]
MQQLESSAEKVVVDQNNVNEDLKDILRRSFRPRTNEAAEAVQNAVETLLTYARRSRVVVREDVAQTIEQLVAELDKKISE
QLTLVLHNKRFQSLEGAWRGLHYLVSNTDTSENLKIRYLNISKADLGKTLRRFKGVVWDQSPIFKMIYEQEYGQFGGEPF
GCLIGDFYFDHSMQDVSILTEMSKISAAAHAPFIAAAAPGLLQMDDWSELSNPRDVSKIFTATEYAFWRRLRESNDSRYL
ALTLPRFLARVPYGPKTQPVEEFGFEEKVDPNRAEDFCWANSAYAMGANITRAFKTYGWCTKIRGVESGGAVEVLPKFVL
PSQDREVDLHCPTEIAISDRREHELSESGLMPLVYRKNSDTAAFIGAKTVHRPAIYEDDDATANSNLSSRLPYIFATCRF
AHYLKCIVRDKIGSFKSAEDTQRWLNDWLMNYVDGDPSISSEVTKSQRPLSAAEVVVDEIPENPGYYRAQFFLRPHFQLE
GLTVSLRLVSKLPSTKHEVTT*

  Nucleotide sequence: 1506 bp    

>T6CP000653 NC_006351:703639-705144 [Burkholderia pseudomallei K96243] [TssC]
ATGCAGCAGCTTGAATCGTCTGCCGAGAAGGTGGTCGTCGATCAGAACAACGTCAACGAGGATCTGAAGGACATCCTGCG
CCGCTCGTTCCGGCCGCGCACCAACGAGGCGGCCGAAGCGGTGCAGAACGCGGTCGAGACGCTGCTCACGTATGCGCGGC
GCAGCCGGGTCGTGGTTCGTGAGGATGTCGCGCAGACGATCGAGCAGCTGGTTGCCGAGCTCGACAAGAAGATCTCCGAG
CAACTGACGCTCGTGCTGCACAACAAGCGCTTTCAGAGCCTCGAAGGCGCGTGGCGCGGATTGCACTACCTCGTGTCGAA
CACCGATACGAGCGAGAACCTGAAGATCCGCTACCTGAACATCTCGAAAGCGGATCTCGGCAAGACGCTGCGGCGCTTCA
AGGGCGTCGTGTGGGATCAGAGTCCGATTTTCAAGATGATCTACGAGCAGGAGTACGGCCAGTTCGGCGGCGAGCCGTTC
GGCTGCCTGATCGGCGACTTCTATTTCGACCACAGCATGCAGGACGTGTCGATCCTCACCGAGATGTCGAAGATCTCGGC
GGCCGCTCACGCGCCGTTCATCGCGGCCGCCGCGCCCGGCCTGCTGCAGATGGACGACTGGAGCGAGCTGTCGAACCCGC
GCGACGTGTCGAAGATCTTCACGGCGACCGAATATGCGTTCTGGCGGCGCCTGCGCGAGAGCAACGACTCGCGCTACCTC
GCGCTCACGCTGCCGCGCTTCCTCGCGCGTGTGCCGTATGGTCCGAAGACGCAGCCTGTCGAAGAGTTCGGCTTCGAGGA
GAAGGTCGACCCGAACCGCGCGGAGGATTTCTGCTGGGCGAACTCCGCGTATGCGATGGGCGCGAACATCACGCGCGCGT
TCAAGACCTACGGCTGGTGCACGAAGATTCGCGGCGTCGAGTCGGGCGGCGCGGTCGAGGTGCTGCCGAAGTTCGTGCTG
CCGTCGCAGGATCGCGAAGTCGATCTGCATTGCCCGACCGAGATCGCGATCTCGGACCGCCGCGAGCACGAATTGTCCGA
GTCGGGCCTGATGCCGCTCGTGTATCGGAAGAATTCGGATACGGCCGCGTTCATCGGCGCGAAGACCGTGCATCGTCCGG
CGATCTACGAGGACGACGACGCGACCGCGAACTCGAACCTGTCGTCGCGGCTGCCGTACATCTTCGCGACCTGCCGTTTC
GCGCATTACCTGAAGTGCATCGTGCGCGACAAGATCGGTTCGTTCAAGTCGGCCGAGGACACGCAGCGCTGGCTCAACGA
CTGGCTGATGAACTACGTGGACGGCGACCCGAGCATCTCGAGCGAGGTGACGAAGTCGCAGCGTCCGCTGTCGGCGGCGG
AGGTGGTCGTCGACGAGATTCCGGAAAACCCCGGCTACTATCGCGCGCAGTTCTTCCTGCGCCCCCATTTCCAACTGGAG
GGTTTGACCGTTTCTCTCCGGCTGGTTTCGAAGCTTCCGTCGACCAAGCACGAGGTGACGACCTGA