Detailed information of component protein


Summary

Component ID T6CP000624
Component protein type TssL
T6SS ID (Type) T6SS00077 insolico (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (262 a.a.); Nucleotide sequence (786 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) BPS_RS16760
Coordinate (Strand) 3716391..3717176 (+)
NCBI ID WP_004521948.1
RefSeq NC_006350
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.2e-58 32..230

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 262 a.a.    

>T6CP000624 NC_006350:3716391-3717176 [Burkholderia pseudomallei K96243] [TssL]
MSYAPSLFGGNTPPPAPQTASSTDAGFQARSLVDLLYDGFFMLFLLKNGREPNDASEFGTRIQEFLSEFERGAKKLNIAA
DDVYAAKFAFCAAIDESVLSSPFKIRADWERRPLQLVLFGEQLAGEKFYQYLEECRAQGAARLQSLEVFHMCLLLGFQGK
YLLEGPEKLAYLTARLGDEIANMKGKRAPFAPHWPLPDQISHRLKREVPLWAIGAVFALVGLLAFVGLNTYLKDSTVRAL
APYSQVIKVGPESANLTISLP*

  Nucleotide sequence: 786 bp    

>T6CP000624 NC_006350:3716391-3717176 [Burkholderia pseudomallei K96243] [TssL]
ATGAGTTACGCGCCCTCCCTCTTCGGCGGCAACACGCCGCCCCCCGCGCCGCAAACGGCTTCGTCGACCGACGCCGGCTT
CCAGGCGCGCTCGCTCGTCGATCTGCTGTACGACGGCTTCTTCATGCTGTTCCTGCTGAAGAACGGCCGCGAGCCGAACG
ACGCGTCGGAATTCGGCACGCGCATTCAGGAATTCCTGAGCGAGTTCGAACGCGGCGCGAAGAAGCTCAACATCGCCGCC
GACGACGTCTATGCGGCGAAGTTCGCGTTTTGCGCGGCGATCGACGAATCGGTACTGTCGTCGCCGTTCAAGATCCGCGC
GGACTGGGAGCGCCGGCCGTTGCAGCTCGTGCTGTTCGGCGAGCAACTCGCGGGCGAGAAGTTCTATCAGTACCTCGAAG
AATGCCGCGCGCAGGGCGCGGCGCGGCTGCAGTCGCTCGAGGTGTTCCATATGTGCCTGCTGCTCGGCTTCCAGGGCAAG
TATCTGCTCGAAGGGCCGGAAAAGCTCGCGTATCTGACCGCACGGCTTGGCGACGAGATCGCGAACATGAAGGGCAAGCG
CGCACCGTTCGCGCCGCATTGGCCGCTGCCGGACCAGATCTCGCACCGGCTCAAGCGCGAGGTGCCGCTGTGGGCGATCG
GGGCGGTGTTCGCGCTCGTCGGGCTGCTGGCGTTCGTCGGGCTGAATACGTATTTGAAAGACAGTACCGTGCGGGCGCTC
GCGCCTTATTCGCAAGTCATCAAGGTGGGGCCGGAGTCGGCTAATTTGACGATTTCGTTGCCTTGA