Detailed information of component protein


Summary

Component ID T6CP000621
Component protein type TssB
T6SS ID (Type) T6SS00077 insolico (Type i4b)
Strain Burkholderia pseudomallei K96243
Replicon chromosome I
Sequence Protein sequence (173 a.a.); Nucleotide sequence (519 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) BPS_RS16740
Coordinate (Strand) 3712724..3713242 (-)
NCBI ID WP_004521952.1
RefSeq NC_006350
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 4.1e-60 12..163

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 173 a.a.    

>T6CP000621 NC_006350:c3713242-3712724 [Burkholderia pseudomallei K96243] [TssB]
MAKKESIQKRLQKVRPPRVQLTYEVERGDAIEIKELPFVVGVVGDLAGQSEIEQPKLRDRKFVNIDRDNFDDVMKAIEPR
ATFQVENRLSEAGGKFAVDLKFRSINDFNPDEVVGQVEPLRRLLEARSKLADLRNKLAGNDKLEDLLSEVLSNTQQLEAL
KKSADGGDKQGE*

  Nucleotide sequence: 519 bp    

>T6CP000621 NC_006350:c3713242-3712724 [Burkholderia pseudomallei K96243] [TssB]
ATGGCGAAGAAAGAAAGCATTCAAAAGCGCTTGCAGAAAGTGCGGCCGCCCCGCGTCCAGTTGACGTACGAGGTCGAACG
GGGCGATGCGATCGAGATCAAGGAGCTGCCGTTCGTCGTCGGGGTCGTCGGCGATCTGGCGGGGCAGTCCGAAATCGAGC
AGCCGAAGCTGCGCGATCGCAAGTTCGTCAACATCGACCGCGACAACTTCGATGACGTGATGAAGGCGATCGAGCCGCGC
GCGACGTTCCAGGTGGAGAACCGCCTGAGCGAGGCGGGCGGCAAGTTCGCGGTCGACCTGAAGTTCCGCTCGATCAACGA
TTTCAATCCGGACGAAGTCGTCGGGCAGGTCGAGCCGCTGCGCCGCCTGCTCGAGGCGCGCTCGAAGCTCGCGGACCTGC
GCAACAAACTGGCCGGCAACGACAAGCTCGAAGACCTGCTGAGCGAAGTGCTGTCGAACACGCAGCAGCTCGAAGCGCTG
AAGAAGAGCGCGGACGGCGGCGACAAGCAGGGCGAATGA