Detailed information of component protein


Summary

Component ID T6CP000524
Component protein type TssD
T6SS ID (Type) T6SS00061 experimental (Type i4b)
Strain Acinetobacter sp. ADP1
Replicon chromosome
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
[1] Basler M, Ho BT, Mekalanos JJ. Tit-for-tat: type VI secretion system counterattack during bacterial cell-cell interactions. Cell. 2013 Feb 14;152(4):884-94. doi: 10.1016/j.cell.2013.01.042. PMID: 23415234
[2] Weber BS, Miyata ST, Iwashkiw JA, et al. Genomic and functional analysis of the type VI secretion system in Acinetobacter. PLoS One. 2013;8(1):e55142. doi: 10.1371/journal.pone.0055142. Epub 2013 Jan 24. PMID: 23365692
[3] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603
[4] Shneider MM, Buth SA, Ho BT, et al. PAAR-repeat proteins sharpen and diversify the type VI secretion system spike. Nature. 2013 Aug 15;500(7462):350-353. doi: 10.1038/nature12453. Epub 2013 Aug 7. PMID: 23925114
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACIAD_RS12230
Coordinate (Strand) 2646545..2647048 (-)
NCBI ID WP_004929007.1
RefSeq NC_005966
Uniprot ID Q6F922_ACIAD
KEGG ID aci:ACIAD2689
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 9e-40 5..139
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-167 MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMLFVKDLDATSPKLWEACSAGYTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSNNTASYAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9848 - -


  Protein sequence: 168 a.a.    

>T6CP000524 NC_005966:c2647048-2646545 [Acinetobacter baylyi ADP1] [TssD]
MKDIYVQFRGKYKVDGESRDSEHKDWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMLFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEVFGLKYAAVEWTYNQQDINGSAKGAVTKKWSLSN
NTASYAA*

  Nucleotide sequence: 504 bp    

>T6CP000524 NC_005966:c2647048-2646545 [Acinetobacter baylyi ADP1] [TssD]
ATGAAAGATATATACGTTCAATTTCGAGGTAAATATAAGGTTGATGGTGAGTCACGTGATTCTGAGCACAAAGACTGGCT
TGAAGTCAACTCGTGGTCGCATAATATTCGCCAGCCAAAATCTGCAACTTCAAGTAGCGTAGGTGGTCACACTGCTGAAC
GTGTTGAGCATTCAGATATGCTTTTTGTTAAAGATTTGGATGCAACCAGCCCTAAACTGTGGGAAGCATGCTCTGCAGGT
TATACCTTTGATGAAGTACAGATCGATTTTTATCGTGCCAATGGTGATAAACGTATCAAGTACCTTCAAATCAAACTCAA
ACATGTTTTAGTTTCAAGTGTAACTCCGACTGTAAATGAAGAGGGTGTACCTACTGAAGTGTTTGGTTTGAAATATGCTG
CAGTTGAGTGGACTTATAACCAGCAAGACATTAACGGTTCTGCTAAAGGTGCTGTGACTAAAAAATGGTCTCTTTCAAAT
AACACTGCATCTTACGCTGCGTAA