Detailed information of component protein


Summary

Component ID T6CP000434
Component protein type TssC
T6SS ID (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS01805
Coordinate (Strand) 398804..400282 (-)
NCBI ID WP_011144760.1
RefSeq NC_005126
Uniprot ID A0A6L9JK37_PHOLM, Q7N9G5_PHOLL
KEGG ID plu:plu0371, plum:A4R40_01810
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.8e-124 66..365
VipB_2 PF18945.2 8.4e-45 379..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MSLHEESSTTLTPGSTTSLLDEIMSQARMTPENDGYHIAKQGVAAFISSILDTGTNEEPVNKLVVDRMIVELDKTLSTQVDEIMHAKEFQELESSWRSLKLLVDRTDFRENIKINIIHATKEELLEDFEFSPEIIQSGLYKHVYSTGYGQFGGEPVAAVIGNYAFSNSSPDIKLMQYVSAVGAMAHAPFLSSVAPDFFGISSFTELPAIKDLKSVFEGPAHTKWRALRESEDSRYLGLTTPRFLLRLPYSTVENPIKNFNYQEDVSKDHEHFLWGNTAYLLATCLTDSFAKYRWCPNIIGPQSGGTVSDLPVHLFEAMGQIQAKIPTEVLVTDRREFELAEEGFITLTMRKGSDNAAFFSANSVQKPKVFPNTREGKMAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNTWLKQYIADQENPPTDVRSRRPLRSAQIQVLDVEGDPGWYQVAMQVRPHFKYMGASFELSLVGRLDKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9908 - -


  Protein sequence: 493 a.a.    

>T6CP000434 NC_005126:c400282-398804 [Photorhabdus laumondii subsp. laumondii TTO1] [TssC]
MSLHEESSTTLTPGSTTSLLDEIMSQARMTPENDGYHIAKQGVAAFISSILDTGTNEEPVNKLVVDRMIVELDKTLSTQV
DEIMHAKEFQELESSWRSLKLLVDRTDFRENIKINIIHATKEELLEDFEFSPEIIQSGLYKHVYSTGYGQFGGEPVAAVI
GNYAFSNSSPDIKLMQYVSAVGAMAHAPFLSSVAPDFFGISSFTELPAIKDLKSVFEGPAHTKWRALRESEDSRYLGLTT
PRFLLRLPYSTVENPIKNFNYQEDVSKDHEHFLWGNTAYLLATCLTDSFAKYRWCPNIIGPQSGGTVSDLPVHLFEAMGQ
IQAKIPTEVLVTDRREFELAEEGFITLTMRKGSDNAAFFSANSVQKPKVFPNTREGKMAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNTWLKQYIADQENPPTDVRSRRPLRSAQIQVLDVEGDPGWYQVAMQVRPHFKYMGAS
FELSLVGRLDKE*

  Nucleotide sequence: 1479 bp    

>T6CP000434 NC_005126:c400282-398804 [Photorhabdus laumondii subsp. laumondii TTO1] [TssC]
ATGTCCTTGCATGAAGAGAGCAGTACAACATTAACCCCAGGGTCCACTACCTCTTTGCTTGACGAGATTATGTCTCAGGC
AAGAATGACGCCGGAAAATGATGGCTACCATATCGCAAAACAAGGTGTTGCCGCTTTTATCAGCAGCATTTTGGATACCG
GTACTAACGAAGAACCTGTCAACAAGCTTGTCGTTGATAGAATGATTGTTGAGCTTGATAAAACACTCAGCACTCAAGTT
GATGAAATTATGCATGCCAAAGAGTTCCAAGAGCTGGAATCATCATGGCGTTCACTGAAATTGCTGGTTGATCGTACCGA
TTTTCGTGAAAACATCAAAATCAACATCATCCATGCGACCAAAGAAGAGTTACTGGAAGATTTCGAATTTTCACCAGAAA
TCATCCAATCAGGCTTATACAAACATGTCTACTCAACAGGTTATGGCCAGTTTGGCGGCGAACCGGTTGCGGCGGTCATC
GGTAACTATGCGTTTAGCAATAGCTCACCCGATATCAAACTGATGCAATATGTCAGCGCGGTTGGCGCAATGGCTCACGC
GCCATTCCTCTCTTCCGTTGCACCTGATTTCTTTGGTATCAGTAGCTTTACCGAATTACCAGCGATTAAAGATCTGAAAT
CTGTCTTCGAAGGCCCGGCACACACCAAATGGCGTGCGCTGCGCGAATCGGAAGATTCACGTTATCTCGGTCTGACAACA
CCGCGCTTCTTGTTACGTCTACCTTACTCAACCGTCGAAAACCCAATTAAAAACTTTAACTATCAGGAAGATGTCAGCAA
AGATCACGAACATTTCCTGTGGGGTAATACCGCTTATCTGCTGGCAACTTGTTTGACTGACAGCTTCGCCAAATATCGCT
GGTGCCCGAATATTATCGGCCCACAAAGCGGTGGTACTGTCAGCGATCTACCGGTTCACCTATTCGAAGCAATGGGGCAG
ATCCAAGCCAAGATCCCGACAGAAGTTTTAGTTACCGATCGTCGTGAATTTGAATTGGCGGAAGAGGGTTTTATCACTCT
GACGATGCGTAAAGGCAGTGACAACGCCGCATTCTTCTCTGCCAACTCAGTCCAGAAGCCAAAAGTGTTCCCGAATACCC
GCGAAGGGAAAATGGCGGAAACCAACTATAAATTGGGTACTCAACTGCCCTATATGTTCATCATCAACCGCCTTGCACAC
TACATCAAAGTGTTACAGCGCGAGCAGATTGGTTCCTGGAAAGAGCGTCAGGATCTGGAGCGTGAACTGAACACCTGGCT
GAAACAGTACATTGCTGATCAGGAAAATCCACCAACGGATGTCCGTAGCCGTCGCCCTCTGCGTTCTGCCCAAATTCAAG
TTTTGGATGTGGAAGGCGATCCAGGCTGGTATCAAGTGGCAATGCAGGTTCGCCCTCATTTTAAATATATGGGAGCCAGC
TTTGAATTGTCACTAGTAGGCCGTCTGGATAAGGAGTAA