Detailed information of component protein


Summary

Component ID T6CP000433
Component protein type TssF
T6SS ID (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (616 a.a.); Nucleotide sequence (1848 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS01795
Coordinate (Strand) 396508..398355 (-)
NCBI ID WP_011144758.1
RefSeq NC_005126
Uniprot ID A0A6L9JJT1_PHOLM, Q7N9G7_PHOLL
KEGG ID plu:plu0369, plum:A4R40_01800
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.6e-153 3..611
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-615 MSLEKYFREELDYLRQLGRQAAIEHPHLASFLSEQGSDPDVERLLEGFAFLAGNLRAKIDDQFPELTHGLLHMLWPNYLRPTPSMTIIQYTPDDSAITKATQIPRGTQIKSRPLTDDSENDEDEDNYLSNTNTQKTGQDDHRCTFTLCRDVWLFPMSIRDISVNNSNEQGVIGLNFTSKTELNLQELQLDKLRFYLSGDDYSSTQLYFWLSYYLEDAKLVVGDTTISLPDFDFVPVGFNREDALLPYPKNAYMGYRVLQEYFCFSEGFLFFDVTGIPKLPASLKATDFTLNLYFSEALPPEIKIRQDTFRLHCVPAINLFPMDGEVIRLDGSRDEYPLRASYSHPNRYDIFSIDKVESWLVGPDGKPKLSRDGRRSYVPFESFHHQIEHESELNTRYFRIRIKESPFRKGLEHYISFVRGDESQLLLSEENVSIQLTCTNRELPLQLRVGDIDYPLSGSSSFATFRNITRPSVPLYPLMSGEYHWSLISNMSLNYMTLLDKDALKAVLRTYDLPSRYNRQSSRSSQKRLDAIERIETRQIDRLFKGLPVRGSESTLYIRQQAFCSEGELYLFCNILSRFFALYASVNSFHMLKVINLDNQECYQWPEQTGQHALM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9894 - -


  Protein sequence: 616 a.a.    

>T6CP000433 NC_005126:c398355-396508 [Photorhabdus laumondii subsp. laumondii TTO1] [TssF]
MSLEKYFREELDYLRQLGRQAAIEHPHLASFLSEQGSDPDVERLLEGFAFLAGNLRAKIDDQFPELTHGLLHMLWPNYLR
PTPSMTIIQYTPDDSAITKATQIPRGTQIKSRPLTDDSENDEDEDNYLSNTNTQKTGQDDHRCTFTLCRDVWLFPMSIRD
ISVNNSNEQGVIGLNFTSKTELNLQELQLDKLRFYLSGDDYSSTQLYFWLSYYLEDAKLVVGDTTISLPDFDFVPVGFNR
EDALLPYPKNAYMGYRVLQEYFCFSEGFLFFDVTGIPKLPASLKATDFTLNLYFSEALPPEIKIRQDTFRLHCVPAINLF
PMDGEVIRLDGSRDEYPLRASYSHPNRYDIFSIDKVESWLVGPDGKPKLSRDGRRSYVPFESFHHQIEHESELNTRYFRI
RIKESPFRKGLEHYISFVRGDESQLLLSEENVSIQLTCTNRELPLQLRVGDIDYPLSGSSSFATFRNITRPSVPLYPLMS
GEYHWSLISNMSLNYMTLLDKDALKAVLRTYDLPSRYNRQSSRSSQKRLDAIERIETRQIDRLFKGLPVRGSESTLYIRQ
QAFCSEGELYLFCNILSRFFALYASVNSFHMLKVINLDNQECYQWPEQTGQHALM*

  Nucleotide sequence: 1848 bp    

>T6CP000433 NC_005126:c398355-396508 [Photorhabdus laumondii subsp. laumondii TTO1] [TssF]
ATGTCACTTGAAAAATATTTTAGAGAGGAACTGGATTACCTTAGACAATTGGGGCGACAAGCCGCAATTGAACATCCTCA
CCTCGCCTCATTTTTGTCTGAACAAGGCTCTGACCCGGATGTTGAGCGTTTACTAGAAGGATTTGCTTTTCTCGCAGGTA
ATTTACGGGCAAAAATTGATGATCAATTCCCTGAGCTGACTCATGGATTGTTACACATGCTATGGCCAAATTACCTGCGG
CCAACGCCTAGCATGACCATTATCCAATATACACCTGATGATAGTGCCATCACAAAAGCGACGCAGATCCCGCGTGGAAC
TCAAATCAAAAGCCGTCCGCTGACGGATGATAGCGAAAATGATGAGGATGAAGATAATTACTTAAGCAATACCAATACTC
AAAAAACAGGCCAAGACGATCATCGCTGTACTTTCACTTTATGCCGTGATGTTTGGCTGTTTCCGATGTCTATCCGGGAC
ATTTCGGTCAATAATAGTAATGAGCAGGGTGTCATCGGTCTGAATTTCACCTCAAAAACAGAACTTAACTTACAAGAACT
GCAACTTGATAAACTGCGTTTTTATCTAAGCGGCGATGATTACAGCAGTACACAACTCTATTTCTGGCTTAGTTATTACC
TTGAAGATGCAAAACTTGTTGTAGGCGATACCACGATTTCATTACCGGATTTTGACTTCGTTCCAGTGGGTTTTAATCGG
GAGGACGCCCTATTGCCTTACCCGAAAAATGCCTATATGGGTTATCGCGTCTTACAAGAGTACTTCTGTTTTTCCGAAGG
TTTTCTGTTTTTCGATGTCACTGGCATCCCTAAATTACCGGCAAGTCTTAAAGCCACAGATTTCACGCTAAATCTCTATT
TCTCAGAAGCTCTGCCGCCAGAAATCAAAATCCGTCAGGATACTTTTCGGTTGCATTGTGTTCCGGCAATCAATCTCTTT
CCAATGGATGGTGAAGTTATTCGATTGGATGGTAGCCGGGACGAATATCCATTGAGAGCGAGTTATAGCCATCCTAATCG
CTACGATATTTTCTCTATTGATAAAGTAGAAAGCTGGCTAGTCGGGCCTGATGGTAAACCTAAACTAAGCCGCGATGGTA
GACGATCTTATGTGCCATTCGAAAGTTTTCACCATCAAATCGAACATGAAAGCGAACTCAATACTCGCTATTTTCGTATC
AGAATCAAGGAATCCCCATTTCGCAAAGGGCTTGAGCATTACATCTCTTTTGTCCGTGGTGATGAATCTCAACTTCTATT
AAGTGAGGAAAATGTCTCTATTCAACTGACGTGCACCAATCGCGAACTGCCACTTCAACTCCGGGTAGGTGATATTGATT
ACCCTTTATCGGGAAGCTCGTCATTTGCGACATTCCGCAACATAACCCGCCCATCCGTTCCACTCTATCCATTGATGAGC
GGTGAGTATCACTGGTCGCTTATTTCCAATATGTCACTGAACTATATGACATTATTGGACAAAGACGCACTAAAGGCGGT
ACTAAGAACTTACGATCTCCCCAGCCGATATAACCGACAATCCTCACGCTCATCACAAAAACGGCTAGATGCCATTGAAC
GGATTGAAACGAGGCAAATAGACCGACTATTTAAAGGTCTCCCGGTACGTGGTTCGGAATCAACATTGTATATCCGGCAA
CAGGCTTTCTGTTCTGAAGGCGAGCTTTATCTGTTCTGCAACATACTGTCACGCTTTTTTGCCTTATATGCCAGCGTTAA
CTCCTTCCACATGTTGAAGGTGATCAATTTAGATAATCAGGAATGTTATCAATGGCCGGAACAGACAGGTCAACATGCGT
TGATGTAA