Detailed information of component protein


Summary

Component ID T6CP000428
Component protein type TssH
T6SS ID (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (882 a.a.); Nucleotide sequence (2646 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS01765
Coordinate (Strand) 388853..391498 (-)
NCBI ID WP_011144752.1
RefSeq NC_005126
Uniprot ID A0A6L9JS68_PHOLM, Q7N9H3_PHOLL
KEGG ID plu:plu0363
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.6e-38 616..777
AAA_lid_9 PF17871.3 5e-29 362..460
ClpB_D2-small PF10431.11 1.3e-11 783..861
AAA PF00004.31 7.1e-08 222..333
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-881 MIQIDLPTLVNRLNPMTRHALEAAAAQCVSQQQPEITVSQLLLQMINTPLSDVRAIFNQAEVDSDLLKEQLDQMIPHHQAMVQAYPNFSPMLVEWLQDSWLLASTEMQHQELRSGVMLMTLLFSPLRYLTPQSARLLSGINRELLRQNFTQWTAGSAEQPVVENDKNGQNKAAAGSDSLLARFTQNMTEQARQGKLDPVLCRDKEIDLMIDILCRRRKNNPIVVGEAGVGKSALIEGLALRIIDNRVPEKLHNSELMTLDLGALQAGAAVKGEFEKRFKGIMNEINQSSVPIILFIDEAHTLIGAGNQQGGLDISNLLKPALARGELKTIAATTWGEYKKYFEKDAALSRRFQLIKVAEPTAEEAIIIMRGLRAIYEQSHGVLIDDEALKASAVLSDRYLSGRQLPDKAIDVLDTACARVAINLTSPPRQISALKNQLHQQQMESDVLAREQRMGLNQHTDRLDELRQQQQETTEKLAALEASWQQQQQLVQQIIELRRQLLTDETEFTNETKQSETSAEMTTEELIAQLAELNEQLEQLQQQQTLISPHVDKNQIATVIAEWTGVPLNRLSQSELSVVTELPMHLGQSIKGQDLAIQCLHQHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIAELMFGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRVIDCKNVVFFLTSNLGYQTIVDNADKPAEMHDRLYPELAAFFKPALLARMEVVPYLPLGHDTLKTIIQGKLARLDNLLRQRFNADVTLSDEVVEEILQRATRTENGARMLESIIDGALLPPLSLLLLQKMAAGKQIRTIQLTVNDHQFNAVVEEIP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9873 - -


  Protein sequence: 882 a.a.    

>T6CP000428 NC_005126:c391498-388853 [Photorhabdus laumondii subsp. laumondii TTO1] [TssH]
MIQIDLPTLVNRLNPMTRHALEAAAAQCVSQQQPEITVSQLLLQMINTPLSDVRAIFNQAEVDSDLLKEQLDQMIPHHQA
MVQAYPNFSPMLVEWLQDSWLLASTEMQHQELRSGVMLMTLLFSPLRYLTPQSARLLSGINRELLRQNFTQWTAGSAEQP
VVENDKNGQNKAAAGSDSLLARFTQNMTEQARQGKLDPVLCRDKEIDLMIDILCRRRKNNPIVVGEAGVGKSALIEGLAL
RIIDNRVPEKLHNSELMTLDLGALQAGAAVKGEFEKRFKGIMNEINQSSVPIILFIDEAHTLIGAGNQQGGLDISNLLKP
ALARGELKTIAATTWGEYKKYFEKDAALSRRFQLIKVAEPTAEEAIIIMRGLRAIYEQSHGVLIDDEALKASAVLSDRYL
SGRQLPDKAIDVLDTACARVAINLTSPPRQISALKNQLHQQQMESDVLAREQRMGLNQHTDRLDELRQQQQETTEKLAAL
EASWQQQQQLVQQIIELRRQLLTDETEFTNETKQSETSAEMTTEELIAQLAELNEQLEQLQQQQTLISPHVDKNQIATVI
AEWTGVPLNRLSQSELSVVTELPMHLGQSIKGQDLAIQCLHQHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIAE
LMFGGRQYLTTINMSEFQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELA
DGEGRVIDCKNVVFFLTSNLGYQTIVDNADKPAEMHDRLYPELAAFFKPALLARMEVVPYLPLGHDTLKTIIQGKLARLD
NLLRQRFNADVTLSDEVVEEILQRATRTENGARMLESIIDGALLPPLSLLLLQKMAAGKQIRTIQLTVNDHQFNAVVEEI
P*

  Nucleotide sequence: 2646 bp    

>T6CP000428 NC_005126:c391498-388853 [Photorhabdus laumondii subsp. laumondii TTO1] [TssH]
ATGATTCAGATTGATCTACCTACACTAGTTAATCGCTTAAATCCGATGACTCGGCACGCTCTGGAAGCGGCGGCAGCGCA
ATGTGTCAGCCAACAGCAACCTGAGATCACGGTTTCACAGCTATTGTTGCAAATGATCAACACCCCTCTCAGTGATGTCA
GAGCGATCTTCAATCAAGCCGAAGTAGACAGCGATTTGCTGAAAGAACAACTTGATCAGATGATCCCTCACCATCAAGCA
ATGGTTCAGGCTTATCCTAACTTTTCTCCAATGTTAGTGGAGTGGTTACAGGATAGCTGGCTGTTAGCATCGACTGAGAT
GCAACATCAGGAATTACGCAGCGGCGTCATGCTGATGACCTTGCTGTTCAGCCCGCTACGTTACCTGACACCCCAATCCG
CACGTCTTTTATCGGGCATAAACCGCGAATTGTTACGCCAGAATTTTACCCAATGGACCGCGGGCTCTGCTGAACAACCG
GTTGTGGAAAACGATAAAAACGGACAAAACAAAGCTGCCGCCGGGAGTGATAGCTTGCTCGCCCGTTTTACTCAAAATAT
GACAGAACAAGCTCGTCAGGGAAAACTCGATCCTGTTCTATGCCGTGACAAAGAAATTGACCTAATGATCGATATTCTCT
GCCGTCGCCGTAAAAATAACCCGATTGTGGTAGGTGAAGCGGGCGTCGGTAAAAGTGCGCTCATTGAAGGGTTGGCTCTG
CGCATTATCGACAACCGAGTGCCGGAAAAACTGCATAACAGTGAATTGATGACACTGGATCTGGGGGCACTACAAGCAGG
TGCGGCGGTAAAAGGTGAATTTGAAAAACGTTTCAAAGGCATTATGAATGAAATAAATCAGTCATCCGTACCGATTATTC
TGTTCATCGATGAAGCTCATACCCTGATTGGCGCCGGTAATCAACAAGGCGGACTGGATATCTCCAACCTGCTAAAACCC
GCTCTGGCACGGGGTGAATTGAAAACAATTGCTGCAACCACTTGGGGAGAATACAAAAAATATTTCGAAAAAGATGCGGC
CCTCTCCCGCCGTTTTCAACTCATTAAAGTGGCCGAACCGACCGCGGAAGAAGCCATCATTATTATGCGTGGCCTGCGGG
CAATCTATGAACAATCTCATGGCGTATTAATCGATGATGAAGCGCTAAAAGCCTCTGCGGTATTAAGCGACCGTTACCTC
TCTGGACGCCAGTTGCCAGACAAAGCCATTGATGTGCTGGATACCGCCTGCGCCCGCGTGGCCATCAACTTGACGTCACC
TCCGCGCCAAATTTCTGCCCTGAAAAACCAACTGCATCAGCAACAAATGGAATCAGACGTGCTGGCGAGGGAACAGCGCA
TGGGGCTCAATCAGCATACTGATCGACTGGATGAACTACGACAACAACAGCAGGAAACCACAGAGAAATTGGCTGCACTA
GAAGCCAGTTGGCAGCAACAACAGCAATTAGTTCAGCAAATTATTGAACTACGCCGTCAGCTATTAACCGACGAAACAGA
ATTCACTAACGAAACAAAACAGAGCGAAACATCGGCCGAAATGACAACTGAAGAGTTGATTGCACAATTGGCTGAACTGA
ATGAACAGTTGGAACAATTACAGCAACAACAAACGCTCATTTCTCCTCACGTGGATAAAAACCAGATTGCAACGGTTATC
GCTGAATGGACTGGCGTGCCACTTAATCGTCTGTCACAAAGTGAACTTTCCGTGGTGACAGAACTGCCCATGCACCTGGG
ACAAAGCATCAAGGGGCAGGATCTGGCTATTCAATGCCTGCATCAGCACTTGTTGACCGCCAGAGCTGACCTGCGCCGTC
CCGGTCGTCCATTGGGCGCCTTCTTGCTGGTAGGACCCAGTGGCGTCGGTAAAACCGAAACCGTTTTACAGATTGCCGAA
TTGATGTTTGGCGGACGTCAATATCTGACCACGATCAATATGTCGGAATTTCAGGAAAAACACACGGTTTCCCGCCTGAT
CGGCTCACCTCCAGGCTATGTTGGCTATGGGGAAGGGGGGGTACTCACCGAAGCTATTCGCCAGAAACCTTATTCCGTCG
TCCTGCTTGATGAAGTGGAAAAAGCGCATCCTGATGTCCTGAACCTGTTCTATCAGGCCTTCGATAAAGGTGAGTTGGCC
GATGGGGAAGGCCGGGTGATTGACTGTAAAAATGTGGTCTTCTTTTTAACGTCCAATTTGGGCTATCAAACTATCGTCGA
TAATGCCGATAAACCGGCAGAGATGCATGACCGGCTTTATCCTGAACTGGCCGCTTTCTTCAAACCCGCCTTACTGGCGC
GAATGGAAGTGGTGCCTTATCTGCCGTTAGGACACGACACCCTGAAAACCATTATTCAGGGCAAACTGGCGCGCCTCGAT
AACTTATTGCGTCAACGCTTCAATGCCGACGTCACCCTGAGTGATGAGGTGGTTGAAGAGATACTGCAACGGGCAACTCG
TACTGAAAATGGCGCCCGCATGCTGGAATCGATCATTGATGGCGCTTTGTTGCCACCGTTATCTCTGCTGTTATTGCAAA
AAATGGCGGCCGGAAAACAGATCCGCACTATCCAGCTCACCGTTAACGACCATCAGTTCAACGCGGTGGTTGAGGAGATA
CCATGA