Detailed information of component protein


Summary

Component ID T6CP000426
Component protein type TssI
T6SS ID (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (632 a.a.); Nucleotide sequence (1896 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS01725
Coordinate (Strand) 377581..379476 (-)
NCBI ID WP_011144747.1
RefSeq NC_005126
Uniprot ID A0A6L9JTV5_PHOLM, Q7N9H8_PHOLL
KEGG ID plu:plu0355, plum:A4R40_01730
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.3e-86 51..349
Phage_base_V PF04717.14 8.8e-14 407..473
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-631 MSFQKKTANAGNLAQQIADRLSPQSAGGLQFTLTAGGLPPHTFVVAGFTLHEALSTPFTLTVSLASADPAIDFAAVLDQSATLTILRAGKVERTVTGMVASFVQGNTGKHQTRYDMTIRPDMWRTTLRQNARIFQQQDIKTILTTLLKENGVRDVAFSLRNPHPEREFCVQYRETDFDFLQRLTAEEGIFYFFEFTGNKNTLVFADDAGSVVKGPVLPYHPDDAEQARQLCITRLTRQAQVRPAVVELKDYTFKNPAWAAEFRHQMREQDLQHTGYEHFDFPGRFKDEQHGADFTRYRLEALRNNALTGDGDSNAATMQPGVLFTLTGHPRPDLNRCWQLVGVTHHGSQPQALEQAAGESGTVMRNDFTFIADNQHWRPAPLPKPAMEGPQIAKVVGPAGEEIYCDAYGRIRLQFLWDRYGRSNDSSSCWIRVTQPWAGQGWGMLAIPRIGQEVVVDFLNGDPDQPIVTGRTYHASNLPPGALPGSKTQMTFRSKTHKGDGYNELRFEDAKGSEALALHAQRDMNTVVLNNRETRVMNDHTESIGHNQMLSVRNDRHKEVTGNEVSAITGLRQITVEKDSLLNVKNNIQIQARAGGIEIATAGGSITIDNAGNISIQGANITINGKQVNVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8501 - -


  Protein sequence: 632 a.a.    

>T6CP000426 NC_005126:c379476-377581 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
MSFQKKTANAGNLAQQIADRLSPQSAGGLQFTLTAGGLPPHTFVVAGFTLHEALSTPFTLTVSLASADPAIDFAAVLDQS
ATLTILRAGKVERTVTGMVASFVQGNTGKHQTRYDMTIRPDMWRTTLRQNARIFQQQDIKTILTTLLKENGVRDVAFSLR
NPHPEREFCVQYRETDFDFLQRLTAEEGIFYFFEFTGNKNTLVFADDAGSVVKGPVLPYHPDDAEQARQLCITRLTRQAQ
VRPAVVELKDYTFKNPAWAAEFRHQMREQDLQHTGYEHFDFPGRFKDEQHGADFTRYRLEALRNNALTGDGDSNAATMQP
GVLFTLTGHPRPDLNRCWQLVGVTHHGSQPQALEQAAGESGTVMRNDFTFIADNQHWRPAPLPKPAMEGPQIAKVVGPAG
EEIYCDAYGRIRLQFLWDRYGRSNDSSSCWIRVTQPWAGQGWGMLAIPRIGQEVVVDFLNGDPDQPIVTGRTYHASNLPP
GALPGSKTQMTFRSKTHKGDGYNELRFEDAKGSEALALHAQRDMNTVVLNNRETRVMNDHTESIGHNQMLSVRNDRHKEV
TGNEVSAITGLRQITVEKDSLLNVKNNIQIQARAGGIEIATAGGSITIDNAGNISIQGANITINGKQVNVN*

  Nucleotide sequence: 1896 bp    

>T6CP000426 NC_005126:c379476-377581 [Photorhabdus laumondii subsp. laumondii TTO1] [TssI]
ATGTCATTTCAGAAAAAAACCGCCAACGCCGGCAACCTCGCACAACAAATCGCTGACCGGCTGAGTCCGCAAAGCGCCGG
CGGGTTACAGTTTACCCTCACCGCCGGCGGCCTGCCGCCGCACACCTTTGTGGTGGCCGGCTTTACCCTGCACGAAGCCC
TCTCCACCCCGTTCACGCTGACCGTCAGTTTAGCCAGCGCCGACCCGGCGATTGATTTCGCCGCCGTCCTCGACCAGAGC
GCCACCCTGACCATCCTGCGCGCCGGCAAAGTCGAGCGCACCGTCACCGGCATGGTCGCCAGCTTTGTCCAGGGCAATAC
CGGCAAACATCAGACCCGCTATGACATGACCATCCGGCCCGATATGTGGCGCACCACCCTGCGCCAGAATGCCCGGATTT
TTCAGCAGCAGGATATCAAAACCATCCTCACCACCCTGCTTAAAGAGAACGGCGTCCGGGATGTGGCGTTCAGCCTGCGC
AATCCGCACCCGGAACGGGAGTTCTGCGTCCAGTACCGCGAAACCGATTTTGACTTTCTGCAACGCCTCACCGCCGAAGA
AGGGATTTTTTACTTCTTTGAATTCACCGGCAATAAAAACACCCTGGTGTTTGCCGACGATGCGGGCTCTGTCGTCAAAG
GCCCGGTGCTGCCCTATCACCCCGACGACGCTGAACAGGCCCGGCAACTGTGCATTACCCGGCTGACCCGCCAGGCGCAG
GTACGGCCGGCGGTGGTCGAGCTCAAAGATTACACCTTCAAAAACCCGGCCTGGGCGGCGGAGTTCCGTCATCAGATGCG
GGAACAGGACCTCCAGCATACCGGCTATGAACATTTCGATTTTCCCGGCCGCTTCAAAGACGAACAGCACGGCGCTGATT
TCACCCGCTACCGGCTGGAAGCGCTGCGCAACAATGCCCTGACCGGCGACGGTGACAGTAATGCCGCGACGATGCAGCCC
GGCGTGCTGTTCACCCTGACCGGCCATCCCCGGCCTGACCTCAACCGGTGCTGGCAGCTGGTCGGCGTCACCCATCATGG
CAGTCAGCCGCAGGCGCTGGAACAGGCCGCCGGGGAGAGCGGCACCGTGATGCGCAACGACTTTACCTTCATTGCTGATA
ATCAGCACTGGCGCCCGGCCCCGTTACCCAAACCGGCGATGGAGGGCCCGCAGATTGCCAAAGTGGTCGGCCCGGCCGGC
GAAGAAATCTACTGCGACGCCTACGGCCGCATCCGCCTGCAATTCCTCTGGGACCGCTACGGCCGGAGCAACGACAGCAG
CTCCTGCTGGATACGGGTGACCCAGCCCTGGGCCGGTCAGGGCTGGGGCATGCTGGCAATACCGCGGATTGGGCAGGAAG
TGGTGGTGGACTTTCTTAACGGCGACCCGGACCAGCCGATTGTCACCGGGCGCACCTACCATGCCAGCAATCTCCCGCCA
GGAGCCCTGCCCGGCAGCAAAACCCAGATGACCTTCCGCTCCAAAACCCATAAAGGGGACGGCTACAACGAACTGCGCTT
CGAGGATGCCAAAGGCAGTGAAGCGCTGGCTTTACACGCCCAGCGGGACATGAACACCGTGGTACTCAATAACCGCGAAA
CCCGGGTCATGAACGACCACACCGAAAGCATCGGCCATAATCAGATGCTTTCGGTCAGAAACGACCGCCACAAAGAGGTG
ACAGGCAATGAAGTCAGCGCTATCACCGGCCTGCGTCAAATCACGGTCGAAAAAGACAGCCTGCTGAACGTCAAAAATAA
CATCCAGATACAGGCCCGGGCGGGGGGTATCGAAATTGCCACGGCCGGCGGCAGCATCACCATCGACAATGCCGGCAATA
TCAGCATTCAGGGGGCCAATATCACCATCAATGGCAAACAGGTCAATGTGAACTGA