Detailed information of component protein


Summary

Component ID T6CP000401
Component protein type TssK
T6SS ID (Type) T6SS00047 experimental (Type i1)
Strain Helicobacter hepaticus ATCC 51449
Replicon chromosome
Sequence Protein sequence (460 a.a.); Nucleotide sequence (1380 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HH_RS01240
Coordinate (Strand) 241053..242432 (+)
NCBI ID WP_011115094.1
RefSeq NC_004917
Uniprot ID A0A4U8SII3_9HELI, Q7VJJ3_HELHP
KEGG ID hhe:HH_0250
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 7.9e-121 19..457
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-459 MNSKLKVAWYNGMHIDKIHFEQQERFLEHIIHTKTSRLVSNLYGVFDVSFSTDMLNLGKIALTQISGITQDGSVFNAPDDDLLPEVLELPPNMSSPIITLKIPTYSDATADMSLKNTFPNSKYIVSNVPTTSKIHDDVQDYIHTNTEEISYQQEKVSLALGSLRLKLGILGDKSPNELEIPIAKVKNIYSHSKKIELDEKFIPTSIDICSNAFIKSFLEEMLFSIKQHKESFTQIFRGIDQTKNTLDFSTYLSLNLLKKYTLIFSYLVNKEKLHPETLYEKLVEFQADLLTISHNDAQDEFIPYEHNDLSAVFIPLSNNIRLLFANVTSPKYAMAQVIDNGNGFYDCIFDNASMLQDGELFLAVSSSLPMQTLLETFSTQSKIHTQATIKSIVASQLKGLHIEAIPSIPSALPHLSGYVYFKLDKQDFIFTHFAKQNVISLYMTNNITKPDIKLWALFN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9897 - -


  Protein sequence: 460 a.a.    

>T6CP000401 NC_004917:241053-242432 [Helicobacter hepaticus ATCC 51449] [TssK]
MNSKLKVAWYNGMHIDKIHFEQQERFLEHIIHTKTSRLVSNLYGVFDVSFSTDMLNLGKIALTQISGITQDGSVFNAPDD
DLLPEVLELPPNMSSPIITLKIPTYSDATADMSLKNTFPNSKYIVSNVPTTSKIHDDVQDYIHTNTEEISYQQEKVSLAL
GSLRLKLGILGDKSPNELEIPIAKVKNIYSHSKKIELDEKFIPTSIDICSNAFIKSFLEEMLFSIKQHKESFTQIFRGID
QTKNTLDFSTYLSLNLLKKYTLIFSYLVNKEKLHPETLYEKLVEFQADLLTISHNDAQDEFIPYEHNDLSAVFIPLSNNI
RLLFANVTSPKYAMAQVIDNGNGFYDCIFDNASMLQDGELFLAVSSSLPMQTLLETFSTQSKIHTQATIKSIVASQLKGL
HIEAIPSIPSALPHLSGYVYFKLDKQDFIFTHFAKQNVISLYMTNNITKPDIKLWALFN*

  Nucleotide sequence: 1380 bp    

>T6CP000401 NC_004917:241053-242432 [Helicobacter hepaticus ATCC 51449] [TssK]
ATGAATAGTAAGCTTAAGGTCGCTTGGTATAATGGTATGCACATTGATAAAATCCATTTTGAGCAACAAGAACGATTTTT
AGAACATATTATCCATACAAAAACCTCTCGACTTGTATCTAATCTTTATGGTGTATTTGATGTAAGTTTTTCTACCGATA
TGCTCAATTTGGGCAAAATAGCCCTTACACAAATTAGTGGAATTACACAAGATGGTAGCGTGTTTAATGCGCCAGATGAT
GATTTATTACCTGAAGTTTTGGAGTTGCCGCCCAATATGTCTTCACCAATTATTACGCTAAAAATCCCTACATATTCAGA
CGCTACTGCTGATATGTCTTTAAAAAATACTTTTCCAAACTCCAAGTATATTGTAAGCAATGTACCTACAACTTCCAAGA
TTCACGATGATGTGCAAGATTACATACATACTAACACAGAAGAAATCTCTTATCAGCAAGAAAAAGTTTCTCTTGCATTG
GGGAGTTTGCGGCTAAAGCTTGGTATCCTTGGAGACAAATCACCAAATGAACTAGAAATACCCATAGCAAAAGTGAAAAA
CATCTATTCTCATAGCAAAAAAATAGAGCTTGATGAAAAATTTATCCCCACCTCTATTGATATTTGCAGTAATGCCTTTA
TAAAAAGTTTTCTAGAAGAAATGCTCTTTTCCATCAAGCAACACAAAGAAAGCTTCACGCAAATTTTTAGAGGCATAGAC
CAAACCAAAAATACGCTTGATTTTAGCACCTATTTATCGCTCAATCTCCTCAAAAAATACACGCTTATCTTTTCTTATCT
TGTCAATAAAGAAAAACTACACCCAGAGACATTATATGAAAAACTTGTAGAATTTCAAGCTGACTTACTTACCATAAGTC
ATAATGATGCACAAGATGAATTTATACCCTACGAGCACAATGATTTAAGTGCGGTTTTCATTCCGCTTAGTAATAATATC
CGCCTCCTCTTTGCTAATGTTACCTCACCCAAATATGCAATGGCACAAGTCATAGACAATGGCAATGGATTCTACGATTG
CATATTTGATAATGCTTCTATGCTGCAAGATGGGGAATTATTCTTAGCAGTAAGCTCCTCTCTACCTATGCAAACGTTAC
TTGAAACCTTTAGCACACAGAGTAAAATACATACCCAAGCCACTATTAAAAGCATTGTTGCCTCACAGCTTAAAGGACTG
CATATAGAGGCAATCCCCAGCATTCCATCAGCTCTACCGCATTTAAGTGGCTATGTATATTTTAAGCTTGATAAGCAAGA
TTTTATCTTTACGCATTTTGCTAAGCAAAATGTTATCAGCCTTTATATGACAAATAATATCACAAAGCCCGACATTAAGC
TTTGGGCATTATTTAACTAA