Detailed information of component protein


Summary

Component ID T6CP000396
Component protein type TssG
T6SS ID (Type) T6SS00047 experimental (Type i1)
Strain Helicobacter hepaticus ATCC 51449
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 235149..236147 (-)
NCBI ID WP_148141005.1
RefSeq NC_004917
Uniprot ID UPI0011D09638
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 IMNFTFYRLIKMLLVSLNREQIFLRSARSLGHAYKEVDILQYHGMADLESKDMLPLEASSVKAMEKLPQNISSKMHTESFVEVFSYFFGLLGQSSPLPYYMLDNFAKNEDDGEGFSLFFDFFNNYLLWLFYDSISLRGYHRSFETDFSDRISFVLLKLLGFSDTTSAKAYLPFAPLILSLRRPKAYIEKILAHNFHLHDRISIVENIPQAIRINKNQQNSLGFKNVTLGKSFLLGSTIYSYQNKILLRIKDLHYQEALDYFPHHKQHNKLRESVIFLTNNEFAIDVRLDMQYNPKMDFRLGDIARATLGFGLLLNKKKANFAQCSMLMTLCE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9682 - -


  Protein sequence: 333 a.a.    


  Nucleotide sequence: 999 bp