Detailed information of component protein


Summary

Component ID T6CP000396
Component protein type TssG
T6SS ID (Type) T6SS00047 experimental (Type i1)
Strain Helicobacter hepaticus ATCC 51449
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) HH_RS01210
Coordinate (Strand) 235149..236147 (-)
NCBI ID WP_148141005.1
RefSeq NC_004917
Uniprot ID UPI0011D09638
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.2e-46 3..314

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 IMNFTFYRLIKMLLVSLNREQIFLRSARSLGHAYKEVDILQYHGMADLESKDMLPLEASSVKAMEKLPQNISSKMHTESFVEVFSYFFGLLGQSSPLPYYMLDNFAKNEDDGEGFSLFFDFFNNYLLWLFYDSISLRGYHRSFETDFSDRISFVLLKLLGFSDTTSAKAYLPFAPLILSLRRPKAYIEKILAHNFHLHDRISIVENIPQAIRINKNQQNSLGFKNVTLGKSFLLGSTIYSYQNKILLRIKDLHYQEALDYFPHHKQHNKLRESVIFLTNNEFAIDVRLDMQYNPKMDFRLGDIARATLGFGLLLNKKKANFAQCSMLMTLCE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9682 - -



  Protein sequence: 333 a.a.    

>T6CP000396 NC_004917:c236147-235149 [Helicobacter hepaticus ATCC 51449] [TssG]
IMNFTFYRLIKMLLVSLNREQIFLRSARSLGHAYKEVDILQYHGMADLESKDMLPLEASSVKAMEKLPQNISSKMHTESF
VEVFSYFFGLLGQSSPLPYYMLDNFAKNEDDGEGFSLFFDFFNNYLLWLFYDSISLRGYHRSFETDFSDRISFVLLKLLG
FSDTTSAKAYLPFAPLILSLRRPKAYIEKILAHNFHLHDRISIVENIPQAIRINKNQQNSLGFKNVTLGKSFLLGSTIYS
YQNKILLRIKDLHYQEALDYFPHHKQHNKLRESVIFLTNNEFAIDVRLDMQYNPKMDFRLGDIARATLGFGLLLNKKKAN
FAQCSMLMTLCE*

  Nucleotide sequence: 999 bp    

>T6CP000396 NC_004917:c236147-235149 [Helicobacter hepaticus ATCC 51449] [TssG]
ATTATGAATTTTACTTTTTATCGGCTAATAAAAATGCTCTTGGTTTCTTTGAATAGGGAGCAAATCTTTTTACGTAGTGC
TAGGAGTTTGGGACATGCGTATAAAGAAGTTGATATATTACAATATCATGGTATGGCAGATTTAGAGTCGAAAGATATGC
TTCCACTTGAGGCTTCATCTGTAAAAGCTATGGAAAAATTACCTCAAAATATATCTTCCAAAATGCATACTGAATCTTTC
GTGGAAGTCTTTAGCTATTTTTTTGGATTGCTAGGGCAATCTTCACCTCTGCCTTATTATATGCTTGATAATTTTGCAAA
AAATGAAGATGATGGCGAAGGCTTTAGTCTTTTTTTTGATTTTTTTAATAATTATCTCTTATGGCTATTTTATGATAGCA
TATCACTTAGAGGTTATCATCGCTCATTTGAGACAGATTTTAGCGATAGAATTTCTTTTGTATTGTTGAAACTTTTAGGT
TTTAGTGATACAACAAGTGCAAAGGCATATCTTCCATTTGCACCTCTTATTTTAAGCCTAAGGAGACCAAAAGCTTATAT
TGAGAAAATTTTGGCACATAATTTTCATTTGCACGATAGAATTTCTATTGTCGAGAATATTCCACAAGCCATTCGTATCA
ATAAGAATCAACAGAATAGTTTAGGATTTAAAAATGTTACTCTTGGCAAAAGTTTTCTACTAGGTAGCACAATATATTCC
TATCAAAATAAAATATTACTCCGCATCAAGGATTTGCATTATCAGGAAGCCCTAGATTATTTTCCACATCATAAGCAACA
CAATAAACTTAGAGAGAGTGTAATTTTTCTCACCAACAATGAATTTGCCATTGATGTTCGTTTAGATATGCAATATAACC
CCAAAATGGATTTTAGGCTCGGCGATATTGCGAGGGCTACTCTTGGTTTTGGGTTATTATTAAATAAAAAAAAGGCGAAT
TTTGCACAATGTAGTATGTTAATGACACTATGTGAGTAA