Detailed information of component protein
Summary
External database links
Locus tag (Gene) | VP_RS06775 |
Coordinate (Strand) | 1496562..1498640 (+) |
NCBI ID | WP_005480708.1 |
RefSeq | NC_004603 |
Uniprot ID | Q87PV7_VIBPA |
KEGG ID | vpa:VP1394 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
Phage_GPD | PF05954.13 | 4.1e-76 | 26..331 |
Phage_base_V | PF04717.14 | 8.8e-15 | 387..455 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-692 | MVNDVEFKFEVPGCGHEFRVESFQVNEELSKPFHISLSLLSLDPDISFDSLIRKAGTLTLYGQGLSAARIFNGVVNEVRYLGTGRRFSRYQLILVPQAWFLSQRQDCRIFQQKSAKDIITEVLDDGSVTDYRFELSGIYPPKEYALQYRESDLHFVQRMMAEHGMWYYFDHTDSNHTMIIVDSNDAIAPLVSSPLNASYIGPIVYHADSGGVADREHISDLELVNRVRTGQVTYTDYNYEQPKIPQEMTHAGDLDQDLKQFDYPGRYVDPVMGQVRTTEWMFEHIVDNQQVEASSDVMRLASGYSFNISDHPRSEINRDYIMLSVMHTGQDPQVHEDEASGMPTTYYNQFTCIPRDVVFKAPKLAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWDRYGNNDEHASCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHFPPYSLPENKTRTTFRTQTHKGTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRDIGQDEFLKVARHQTNEVHGDHKETIDGHKTTQVNSTFTETVEQDVTVTYNANETQYVKNNSDLEIGDNRTTKIGKNDDLDVGENSNLTVGASKSSDIGADDNQTVGGNLTVSVKGNTSYKADGATQIISGDKIVLKTGGSSLVMNSDGSIKLSGSSITIEGSDKVVVKGGNVAIN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9826 | - | - |
Protein sequence: 693 a.a.
>T6CP000357 NC_004603:1496562-1498640 [Vibrio parahaemolyticus RIMD 2210633] [TssI]
MVNDVEFKFEVPGCGHEFRVESFQVNEELSKPFHISLSLLSLDPDISFDSLIRKAGTLTLYGQGLSAARIFNGVVNEVRY
LGTGRRFSRYQLILVPQAWFLSQRQDCRIFQQKSAKDIITEVLDDGSVTDYRFELSGIYPPKEYALQYRESDLHFVQRMM
AEHGMWYYFDHTDSNHTMIIVDSNDAIAPLVSSPLNASYIGPIVYHADSGGVADREHISDLELVNRVRTGQVTYTDYNYE
QPKIPQEMTHAGDLDQDLKQFDYPGRYVDPVMGQVRTTEWMFEHIVDNQQVEASSDVMRLASGYSFNISDHPRSEINRDY
IMLSVMHTGQDPQVHEDEASGMPTTYYNQFTCIPRDVVFKAPKLAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWD
RYGNNDEHASCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHFPPYSLPENKTRTTFRTQTHK
GTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRDIGQDEFLKVARHQTNEVHGDHKETIDGHKTTQVNSTFTETVEQ
DVTVTYNANETQYVKNNSDLEIGDNRTTKIGKNDDLDVGENSNLTVGASKSSDIGADDNQTVGGNLTVSVKGNTSYKADG
ATQIISGDKIVLKTGGSSLVMNSDGSIKLSGSSITIEGSDKVVVKGGNVAIN*
MVNDVEFKFEVPGCGHEFRVESFQVNEELSKPFHISLSLLSLDPDISFDSLIRKAGTLTLYGQGLSAARIFNGVVNEVRY
LGTGRRFSRYQLILVPQAWFLSQRQDCRIFQQKSAKDIITEVLDDGSVTDYRFELSGIYPPKEYALQYRESDLHFVQRMM
AEHGMWYYFDHTDSNHTMIIVDSNDAIAPLVSSPLNASYIGPIVYHADSGGVADREHISDLELVNRVRTGQVTYTDYNYE
QPKIPQEMTHAGDLDQDLKQFDYPGRYVDPVMGQVRTTEWMFEHIVDNQQVEASSDVMRLASGYSFNISDHPRSEINRDY
IMLSVMHTGQDPQVHEDEASGMPTTYYNQFTCIPRDVVFKAPKLAAPVVDGPQTAVVVGPAGEEIYTDKLGRIKVQFHWD
RYGNNDEHASCWIRVSQSMAAPTWGAVYLPRIGHEVVVTFLEGDPDRPLVTGAVYNGLHFPPYSLPENKTRTTFRTQTHK
GTGYNELSFEDEANQEEVYIHAQKDMSTKVLNNRYRDIGQDEFLKVARHQTNEVHGDHKETIDGHKTTQVNSTFTETVEQ
DVTVTYNANETQYVKNNSDLEIGDNRTTKIGKNDDLDVGENSNLTVGASKSSDIGADDNQTVGGNLTVSVKGNTSYKADG
ATQIISGDKIVLKTGGSSLVMNSDGSIKLSGSSITIEGSDKVVVKGGNVAIN*
Nucleotide sequence: 2079 bp
>T6CP000357 NC_004603:1496562-1498640 [Vibrio parahaemolyticus RIMD 2210633] [TssI]
ATGGTGAATGACGTAGAATTTAAATTTGAAGTGCCAGGGTGTGGGCACGAGTTTCGGGTAGAAAGCTTTCAAGTAAATGA
AGAGCTTTCGAAACCTTTTCACATCAGTCTCTCATTACTTTCACTTGATCCAGATATCTCTTTTGATTCGTTAATACGAA
AAGCAGGTACACTGACTCTTTATGGACAAGGCTTAAGCGCGGCACGCATATTCAATGGTGTGGTGAACGAAGTTCGTTAT
TTGGGTACAGGCCGTCGCTTCTCTCGCTATCAGTTAATTTTGGTTCCGCAGGCTTGGTTTTTATCACAGCGCCAAGACTG
TCGTATTTTCCAACAAAAATCAGCGAAAGATATAATTACAGAGGTGCTTGATGATGGTTCAGTGACCGACTATCGCTTTG
AATTGTCTGGTATTTATCCACCAAAGGAGTACGCACTGCAATACCGTGAGTCAGACCTACACTTTGTTCAGCGTATGATG
GCAGAACACGGTATGTGGTATTATTTCGACCACACCGATTCAAACCACACAATGATCATTGTCGATAGTAATGATGCCAT
TGCTCCACTGGTTAGCTCTCCTCTCAATGCATCTTATATTGGGCCGATCGTATATCATGCCGATAGTGGGGGTGTTGCTG
ACCGTGAGCATATCTCCGATCTCGAGTTAGTTAACCGTGTGAGAACGGGTCAGGTTACTTACACTGACTACAACTACGAG
CAGCCAAAGATCCCGCAAGAGATGACTCACGCAGGTGATCTGGACCAAGATTTAAAGCAGTTTGATTATCCTGGACGTTA
TGTTGACCCTGTAATGGGGCAGGTGAGAACCACTGAGTGGATGTTTGAGCACATTGTCGATAATCAGCAAGTAGAAGCGA
GCAGTGATGTGATGCGTTTGGCGTCTGGTTACAGCTTTAACATCAGTGACCATCCTCGCTCTGAAATCAACCGTGATTAC
ATCATGTTATCCGTCATGCACACAGGGCAAGACCCACAAGTGCACGAAGACGAAGCGAGTGGCATGCCAACTACTTACTA
CAACCAGTTCACGTGTATTCCACGTGATGTTGTATTCAAAGCGCCCAAGTTGGCGGCTCCAGTAGTGGATGGTCCGCAAA
CTGCGGTTGTAGTTGGTCCTGCAGGGGAGGAGATTTACACCGATAAACTAGGACGAATTAAGGTTCAGTTCCATTGGGAT
CGCTACGGTAACAACGATGAACATGCAAGTTGCTGGATTCGTGTGAGTCAATCAATGGCTGCTCCAACGTGGGGTGCGGT
TTACTTGCCACGTATTGGTCATGAAGTCGTAGTCACCTTCCTTGAAGGCGACCCAGATCGCCCATTGGTGACTGGCGCAG
TTTATAACGGTCTTCACTTCCCTCCGTACTCGTTGCCTGAGAACAAAACTCGTACTACGTTCCGTACGCAAACGCACAAA
GGCACCGGCTACAACGAACTGAGTTTTGAAGACGAAGCGAACCAAGAAGAAGTCTACATTCATGCTCAAAAAGACATGTC
GACCAAAGTTCTCAACAATCGTTACCGAGATATCGGTCAGGATGAGTTCTTAAAGGTTGCGCGTCATCAGACGAACGAAG
TCCATGGTGATCATAAAGAAACCATTGATGGCCACAAAACAACCCAAGTAAACAGCACTTTTACCGAGACAGTAGAGCAA
GACGTTACCGTTACATACAACGCCAACGAAACCCAATATGTGAAGAACAATTCTGATTTGGAAATTGGAGATAACCGCAC
AACCAAGATCGGCAAGAACGATGATTTGGATGTGGGTGAAAACAGTAACTTAACTGTTGGTGCATCAAAAAGCTCGGACA
TTGGTGCCGATGATAACCAAACAGTGGGTGGCAACTTAACCGTATCGGTAAAAGGCAATACATCTTACAAAGCCGATGGC
GCGACGCAGATCATCAGTGGTGACAAGATTGTACTGAAAACAGGCGGTTCTTCTTTAGTGATGAACAGTGATGGTTCAAT
CAAGCTCTCAGGGTCTTCAATCACCATTGAAGGCAGCGATAAAGTCGTCGTGAAAGGTGGTAACGTAGCGATTAACTAA
ATGGTGAATGACGTAGAATTTAAATTTGAAGTGCCAGGGTGTGGGCACGAGTTTCGGGTAGAAAGCTTTCAAGTAAATGA
AGAGCTTTCGAAACCTTTTCACATCAGTCTCTCATTACTTTCACTTGATCCAGATATCTCTTTTGATTCGTTAATACGAA
AAGCAGGTACACTGACTCTTTATGGACAAGGCTTAAGCGCGGCACGCATATTCAATGGTGTGGTGAACGAAGTTCGTTAT
TTGGGTACAGGCCGTCGCTTCTCTCGCTATCAGTTAATTTTGGTTCCGCAGGCTTGGTTTTTATCACAGCGCCAAGACTG
TCGTATTTTCCAACAAAAATCAGCGAAAGATATAATTACAGAGGTGCTTGATGATGGTTCAGTGACCGACTATCGCTTTG
AATTGTCTGGTATTTATCCACCAAAGGAGTACGCACTGCAATACCGTGAGTCAGACCTACACTTTGTTCAGCGTATGATG
GCAGAACACGGTATGTGGTATTATTTCGACCACACCGATTCAAACCACACAATGATCATTGTCGATAGTAATGATGCCAT
TGCTCCACTGGTTAGCTCTCCTCTCAATGCATCTTATATTGGGCCGATCGTATATCATGCCGATAGTGGGGGTGTTGCTG
ACCGTGAGCATATCTCCGATCTCGAGTTAGTTAACCGTGTGAGAACGGGTCAGGTTACTTACACTGACTACAACTACGAG
CAGCCAAAGATCCCGCAAGAGATGACTCACGCAGGTGATCTGGACCAAGATTTAAAGCAGTTTGATTATCCTGGACGTTA
TGTTGACCCTGTAATGGGGCAGGTGAGAACCACTGAGTGGATGTTTGAGCACATTGTCGATAATCAGCAAGTAGAAGCGA
GCAGTGATGTGATGCGTTTGGCGTCTGGTTACAGCTTTAACATCAGTGACCATCCTCGCTCTGAAATCAACCGTGATTAC
ATCATGTTATCCGTCATGCACACAGGGCAAGACCCACAAGTGCACGAAGACGAAGCGAGTGGCATGCCAACTACTTACTA
CAACCAGTTCACGTGTATTCCACGTGATGTTGTATTCAAAGCGCCCAAGTTGGCGGCTCCAGTAGTGGATGGTCCGCAAA
CTGCGGTTGTAGTTGGTCCTGCAGGGGAGGAGATTTACACCGATAAACTAGGACGAATTAAGGTTCAGTTCCATTGGGAT
CGCTACGGTAACAACGATGAACATGCAAGTTGCTGGATTCGTGTGAGTCAATCAATGGCTGCTCCAACGTGGGGTGCGGT
TTACTTGCCACGTATTGGTCATGAAGTCGTAGTCACCTTCCTTGAAGGCGACCCAGATCGCCCATTGGTGACTGGCGCAG
TTTATAACGGTCTTCACTTCCCTCCGTACTCGTTGCCTGAGAACAAAACTCGTACTACGTTCCGTACGCAAACGCACAAA
GGCACCGGCTACAACGAACTGAGTTTTGAAGACGAAGCGAACCAAGAAGAAGTCTACATTCATGCTCAAAAAGACATGTC
GACCAAAGTTCTCAACAATCGTTACCGAGATATCGGTCAGGATGAGTTCTTAAAGGTTGCGCGTCATCAGACGAACGAAG
TCCATGGTGATCATAAAGAAACCATTGATGGCCACAAAACAACCCAAGTAAACAGCACTTTTACCGAGACAGTAGAGCAA
GACGTTACCGTTACATACAACGCCAACGAAACCCAATATGTGAAGAACAATTCTGATTTGGAAATTGGAGATAACCGCAC
AACCAAGATCGGCAAGAACGATGATTTGGATGTGGGTGAAAACAGTAACTTAACTGTTGGTGCATCAAAAAGCTCGGACA
TTGGTGCCGATGATAACCAAACAGTGGGTGGCAACTTAACCGTATCGGTAAAAGGCAATACATCTTACAAAGCCGATGGC
GCGACGCAGATCATCAGTGGTGACAAGATTGTACTGAAAACAGGCGGTTCTTCTTTAGTGATGAACAGTGATGGTTCAAT
CAAGCTCTCAGGGTCTTCAATCACCATTGAAGGCAGCGATAAAGTCGTCGTGAAAGGTGGTAACGTAGCGATTAACTAA