Detailed information of component protein
Summary
External database links
Locus tag (Gene) | C_RS16150 |
Coordinate (Strand) | 3247486..3247914 (+) |
NCBI ID | WP_000106967.1 |
RefSeq | NC_004431 |
Uniprot ID | S1P1A6_ECOLX, A0A0E2LFQ2_ECOU3, A0A0H2VA70_ECOL6, Q1R7K6_ECOUT, A0A0H2Z217_ECOK1, E2QQS9_ECOLX, B7MLF6_ECO45, A0A1X3K5E6_ECOLX, A0A0H3ENY5_ECO8N |
KEGG ID | ecc:c3402, ecv:APECO1_3695, eln:NRG857_13880, ecz:ECS88_3105, eci:UTI89_C3209 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 5.1e-12 | 31..112 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-142 | MSTPSLYEMLTFSFSGELPLEQISERDQLILSVMDNMQRIINCRAGTLAHLPDYGLPDLSLIHQGMAAGIHGLMRQIEETLLRYEPRLSQIQVELLPQPRPGHLNYLIHAQLPDTGWIRFDGVFSPEGRIVLRHLKQQERAY |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9888 | - | - |
Protein sequence: 143 a.a.
>T6CP000300 NC_004431:3247486-3247914 [Escherichia coli CFT073] [TssE]
MSTPSLYEMLTFSFSGELPLEQISERDQLILSVMDNMQRIINCRAGTLAHLPDYGLPDLSLIHQGMAAGIHGLMRQIEET
LLRYEPRLSQIQVELLPQPRPGHLNYLIHAQLPDTGWIRFDGVFSPEGRIVLRHLKQQERAY*
MSTPSLYEMLTFSFSGELPLEQISERDQLILSVMDNMQRIINCRAGTLAHLPDYGLPDLSLIHQGMAAGIHGLMRQIEET
LLRYEPRLSQIQVELLPQPRPGHLNYLIHAQLPDTGWIRFDGVFSPEGRIVLRHLKQQERAY*
Nucleotide sequence: 429 bp
>T6CP000300 NC_004431:3247486-3247914 [Escherichia coli CFT073] [TssE]
ATGTCGACACCTTCCTTATATGAAATGCTGACGTTCAGTTTCAGCGGCGAGTTACCGCTGGAACAGATCAGCGAGCGGGA
TCAGCTTATCCTTTCCGTGATGGACAATATGCAACGCATTATCAACTGCCGGGCAGGCACGCTGGCGCATTTGCCGGATT
ACGGTCTGCCGGATCTCAGTCTGATCCATCAGGGGATGGCTGCGGGTATTCATGGCCTGATGCGTCAGATTGAAGAAACA
CTGCTGCGTTATGAACCACGCCTGAGTCAGATACAGGTGGAATTACTCCCCCAGCCCCGTCCGGGGCATCTTAATTACCT
GATCCACGCGCAGCTTCCCGATACCGGCTGGATACGCTTTGATGGCGTATTTTCTCCGGAAGGACGAATTGTTCTGCGTC
ATCTCAAACAACAGGAGCGGGCGTACTGA
ATGTCGACACCTTCCTTATATGAAATGCTGACGTTCAGTTTCAGCGGCGAGTTACCGCTGGAACAGATCAGCGAGCGGGA
TCAGCTTATCCTTTCCGTGATGGACAATATGCAACGCATTATCAACTGCCGGGCAGGCACGCTGGCGCATTTGCCGGATT
ACGGTCTGCCGGATCTCAGTCTGATCCATCAGGGGATGGCTGCGGGTATTCATGGCCTGATGCGTCAGATTGAAGAAACA
CTGCTGCGTTATGAACCACGCCTGAGTCAGATACAGGTGGAATTACTCCCCCAGCCCCGTCCGGGGCATCTTAATTACCT
GATCCACGCGCAGCTTCCCGATACCGGCTGGATACGCTTTGATGGCGTATTTTCTCCGGAAGGACGAATTGTTCTGCGTC
ATCTCAAACAACAGGAGCGGGCGTACTGA