Detailed information of component protein


Summary

Component ID T6CP000293
Component protein type TssC
T6SS ID (Type) T6SS00037 experimental (Type i2)
Strain Escherichia coli CFT073
Replicon chromosome
Sequence Protein sequence (513 a.a.); Nucleotide sequence (1539 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C_RS16070
Coordinate (Strand) 3223582..3225120 (+)
NCBI ID WP_001350147.1
RefSeq NC_004431
Uniprot ID A0A2G9AAW2_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.2e-119 89..387
VipB_2 PF18945.2 5.7e-39 397..507
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-512 MSVQQEHATSETATLTTTESGGVYQSLFDKINLTPVSSIQEIDLWQNSETLADASPDERVTAAIHVLLSCLAKSGEDVVKLDKSLLDFHIDDLDQKISKQLDAVMHHPEFQKVESLWRGTWFVVQRTDFRKNVRIELLDISKEHLRQDFDDSPEIIQSGLYRHTYIQEYDTPGGEPVASLISSYEFDNSPQDIALLRNISRVSAASHMPFIGSVGPKFFLKNSMEEVAAIKDIGNYFDRAEYIKWKSFRDTDDSRYVGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHEKYLWTNASFAFAANMVKSFVNNGWCVQIRGPQAGGAVADLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKIIQRENIGTTKDRRVLELELNTWIRTLVTEMTDPGDELQASHPLRDGKVIVEDIEDNPGFFRVRLFAVPHFQIEGMDVNLSLVSQMPKAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9865 - -


  Protein sequence: 513 a.a.    

>T6CP000293 NC_004431:3223582-3225120 [Escherichia coli CFT073] [TssC]
MSVQQEHATSETATLTTTESGGVYQSLFDKINLTPVSSIQEIDLWQNSETLADASPDERVTAAIHVLLSCLAKSGEDVVK
LDKSLLDFHIDDLDQKISKQLDAVMHHPEFQKVESLWRGTWFVVQRTDFRKNVRIELLDISKEHLRQDFDDSPEIIQSGL
YRHTYIQEYDTPGGEPVASLISSYEFDNSPQDIALLRNISRVSAASHMPFIGSVGPKFFLKNSMEEVAAIKDIGNYFDRA
EYIKWKSFRDTDDSRYVGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHEKYLWTNASFAFAANMVKSFVNNGWCVQI
RGPQAGGAVADLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATAN
SRINARLPYIFLLSRIAHYLKIIQRENIGTTKDRRVLELELNTWIRTLVTEMTDPGDELQASHPLRDGKVIVEDIEDNPG
FFRVRLFAVPHFQIEGMDVNLSLVSQMPKAKA*

  Nucleotide sequence: 1539 bp    

>T6CP000293 NC_004431:3223582-3225120 [Escherichia coli CFT073] [TssC]
ATGTCTGTACAACAAGAACATGCCACCTCTGAAACTGCAACACTCACCACCACTGAGTCCGGCGGCGTTTATCAGTCCCT
GTTCGATAAAATTAATTTAACCCCGGTGTCTTCCATTCAGGAAATCGATTTATGGCAAAACAGCGAAACGCTGGCCGATG
CCTCACCCGATGAGCGCGTGACGGCGGCGATTCACGTTCTGCTTTCCTGTCTGGCGAAATCAGGCGAGGACGTGGTTAAG
CTCGACAAGAGCCTGCTGGATTTTCATATCGACGATCTGGATCAGAAAATCAGTAAACAGCTTGATGCGGTCATGCACCA
CCCTGAATTCCAGAAAGTCGAGTCGCTGTGGCGTGGTACATGGTTCGTCGTACAGCGCACTGATTTTCGCAAAAATGTCA
GAATTGAATTGCTGGATATCAGCAAAGAGCATCTGCGTCAGGATTTTGATGATTCACCGGAAATCATTCAGAGTGGTTTA
TATCGCCATACATACATTCAGGAGTACGATACGCCGGGTGGCGAACCTGTAGCCTCATTAATATCCAGCTATGAATTTGA
TAACAGCCCGCAGGATATTGCCCTGCTGCGTAATATTTCCAGAGTGTCTGCCGCTTCCCATATGCCTTTTATCGGTTCTG
TCGGACCGAAATTCTTCCTTAAAAATTCGATGGAAGAAGTCGCCGCGATTAAAGATATCGGCAACTACTTTGACCGCGCA
GAATATATTAAATGGAAGTCGTTCCGCGATACGGATGACAGCCGCTATGTGGGATTAGTGATGCCGCGCGTGCTGGGCCG
TCTGCCCTATGGGCCGGACACGGTGCCGGTACGCAGCTTTAACTATGTGGAAGAAGTCAAAGGCCCGGATCACGAAAAAT
ACCTGTGGACAAACGCCTCGTTCGCCTTTGCCGCCAATATGGTGAAGAGCTTTGTGAATAATGGCTGGTGCGTGCAGATC
CGTGGCCCACAGGCGGGCGGCGCAGTGGCCGATCTGCCGATCCATCTTTACGATCTCGGCACCGGCAATCAGGTCAAAAT
TCCGTCCGAAGTGATGATCCCGGAAACCCGCGAGTTTGAGTTCGCCAACCTTGGCTTTATTCCACTCTCTTATTACAAAA
ACCGCGATTACGCCTGCTTTTTCTCGGCAAACTCCGCCCAGAAACCGGCGCTGTATGATACCGCTGACGCCACCGCCAAC
AGCCGTATCAACGCCCGTTTGCCCTATATCTTCCTGCTGTCCCGCATTGCTCACTACCTGAAAATTATTCAGCGCGAGAA
TATCGGCACCACCAAAGACCGCCGCGTGCTGGAACTGGAGCTTAACACCTGGATCCGCACGCTGGTGACGGAAATGACCG
ATCCGGGCGATGAACTTCAGGCTTCGCATCCACTGCGCGACGGGAAAGTTATCGTCGAGGACATAGAGGACAATCCGGGC
TTTTTCCGCGTCAGACTCTTTGCCGTGCCGCATTTCCAGATCGAAGGGATGGACGTCAACCTTTCTCTGGTTTCCCAGAT
GCCAAAAGCAAAAGCCTGA