Detailed information of component protein
Summary
Component ID | T6CP000210 |
Component protein type | TssI |
T6SS ID (Type) | T6SS00026 (Type i4b) |
Strain | Ralstonia solanacearum GMI1000 |
Replicon | plasmid pGMI1000MP |
Sequence | Protein sequence (919 a.a.); Nucleotide sequence (2757 bp) |
Reference |
External database links
Locus tag (Gene) | RS_RS20705 |
Coordinate (Strand) | 941920..944676 (+) |
NCBI ID | WP_011004048.1 |
RefSeq | NC_003296 |
Uniprot ID | Q8XRT1_RALSO |
KEGG ID | rso:RSp0750 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
Phage_GPD | PF05954.13 | 1.9e-74 | 47..362 |
DUF2345 | PF10106.11 | 6.5e-41 | 728..884 |
T6SS_Vgr | PF13296.8 | 8.4e-25 | 586..689 |
Phage_base_V | PF04717.14 | 1.5e-11 | 479..528 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-918 | MVSPTELANLLRAAFTQANRLLRLDTPLGPNALLPERLDVAEHLDDGGFRLELTALSDDADLDPARLLGQPVRLDLLTQQSRGALRPFHGHVTRFEQLGANGGLVRYRLVIEPWLAFLRHRRDSFLFQDQSVIEVIDSLFGDYNGQGRLAPAWRWSLRDASVYTRRSVITQYEESDFDFVTRLLAEEGLFYFFEHEAVEGDALGVHRMVIADANDVFTDNAQAAIRFGRADATANEDVIDRWQGVRRWQTNAVSIASWDYRANTQRSAQLGAQQWRDGIPQLTLQDTDYPGQYWFEDSAQAQRSARLVMEALELRDKQFDGEGSVRTLALGTRFQLVDHYEHGDDGEARFAVLSVLHRARNNFNERFGQVLTQALGALSGADAQDAAGNAGTDATFYRNHFTVVHDTVPYRPQQRDAQGRALHPRPTVEGSQTALVVGTGGPVHTDRDHRIKVQFHWQRGARSASRQPHPAGDDNARAEAGLGCWVRVAAPVAGPNWGGVALPRVGQEVLVEFVQGDIDRPVVVGAAYNGSGQRDAQYNQNQAGAAGATGNAPAWFAGDSKSQGAYAHNAVLSGIKTQALAGSQTGASGYSQLVFDDTEGQGRTQLSTTQAATALTLGHQKEQIDSARQADLGHGAALATNDSGSVRAGAGLLLTAHAADTGAALLDSEGAASQIEALSELAESLADVARKQQAGLPEEPAAQDLPALKQLRHTTEVLRHAESAGKGASAIAYSEPHLQVSAPKGIAATTPADAVLVAGTQIALAAKQDANLAAGGNLAMAVADGLTLFAHGKAVGQSSDAARGIAMHAASGKVSLSALKGESRLVAEKAVTVASTQGNVTAEGKARVLVNAAGAQIRVTNGTIELHAPGKTIFKGAGHVFVGPGGGAVSNTLAQGNLKGCGTQEGNAATKGTGSISR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9916 | - | - |
Protein sequence: 919 a.a.
>T6CP000210 NC_003296:941920-944676 [Ralstonia solanacearum GMI1000] [TssI]
MVSPTELANLLRAAFTQANRLLRLDTPLGPNALLPERLDVAEHLDDGGFRLELTALSDDADLDPARLLGQPVRLDLLTQQ
SRGALRPFHGHVTRFEQLGANGGLVRYRLVIEPWLAFLRHRRDSFLFQDQSVIEVIDSLFGDYNGQGRLAPAWRWSLRDA
SVYTRRSVITQYEESDFDFVTRLLAEEGLFYFFEHEAVEGDALGVHRMVIADANDVFTDNAQAAIRFGRADATANEDVID
RWQGVRRWQTNAVSIASWDYRANTQRSAQLGAQQWRDGIPQLTLQDTDYPGQYWFEDSAQAQRSARLVMEALELRDKQFD
GEGSVRTLALGTRFQLVDHYEHGDDGEARFAVLSVLHRARNNFNERFGQVLTQALGALSGADAQDAAGNAGTDATFYRNH
FTVVHDTVPYRPQQRDAQGRALHPRPTVEGSQTALVVGTGGPVHTDRDHRIKVQFHWQRGARSASRQPHPAGDDNARAEA
GLGCWVRVAAPVAGPNWGGVALPRVGQEVLVEFVQGDIDRPVVVGAAYNGSGQRDAQYNQNQAGAAGATGNAPAWFAGDS
KSQGAYAHNAVLSGIKTQALAGSQTGASGYSQLVFDDTEGQGRTQLSTTQAATALTLGHQKEQIDSARQADLGHGAALAT
NDSGSVRAGAGLLLTAHAADTGAALLDSEGAASQIEALSELAESLADVARKQQAGLPEEPAAQDLPALKQLRHTTEVLRH
AESAGKGASAIAYSEPHLQVSAPKGIAATTPADAVLVAGTQIALAAKQDANLAAGGNLAMAVADGLTLFAHGKAVGQSSD
AARGIAMHAASGKVSLSALKGESRLVAEKAVTVASTQGNVTAEGKARVLVNAAGAQIRVTNGTIELHAPGKTIFKGAGHV
FVGPGGGAVSNTLAQGNLKGCGTQEGNAATKGTGSISR*
MVSPTELANLLRAAFTQANRLLRLDTPLGPNALLPERLDVAEHLDDGGFRLELTALSDDADLDPARLLGQPVRLDLLTQQ
SRGALRPFHGHVTRFEQLGANGGLVRYRLVIEPWLAFLRHRRDSFLFQDQSVIEVIDSLFGDYNGQGRLAPAWRWSLRDA
SVYTRRSVITQYEESDFDFVTRLLAEEGLFYFFEHEAVEGDALGVHRMVIADANDVFTDNAQAAIRFGRADATANEDVID
RWQGVRRWQTNAVSIASWDYRANTQRSAQLGAQQWRDGIPQLTLQDTDYPGQYWFEDSAQAQRSARLVMEALELRDKQFD
GEGSVRTLALGTRFQLVDHYEHGDDGEARFAVLSVLHRARNNFNERFGQVLTQALGALSGADAQDAAGNAGTDATFYRNH
FTVVHDTVPYRPQQRDAQGRALHPRPTVEGSQTALVVGTGGPVHTDRDHRIKVQFHWQRGARSASRQPHPAGDDNARAEA
GLGCWVRVAAPVAGPNWGGVALPRVGQEVLVEFVQGDIDRPVVVGAAYNGSGQRDAQYNQNQAGAAGATGNAPAWFAGDS
KSQGAYAHNAVLSGIKTQALAGSQTGASGYSQLVFDDTEGQGRTQLSTTQAATALTLGHQKEQIDSARQADLGHGAALAT
NDSGSVRAGAGLLLTAHAADTGAALLDSEGAASQIEALSELAESLADVARKQQAGLPEEPAAQDLPALKQLRHTTEVLRH
AESAGKGASAIAYSEPHLQVSAPKGIAATTPADAVLVAGTQIALAAKQDANLAAGGNLAMAVADGLTLFAHGKAVGQSSD
AARGIAMHAASGKVSLSALKGESRLVAEKAVTVASTQGNVTAEGKARVLVNAAGAQIRVTNGTIELHAPGKTIFKGAGHV
FVGPGGGAVSNTLAQGNLKGCGTQEGNAATKGTGSISR*
Nucleotide sequence: 2757 bp
>T6CP000210 NC_003296:941920-944676 [Ralstonia solanacearum GMI1000] [TssI]
ATGGTCTCACCGACCGAGCTGGCCAACCTGCTGCGGGCCGCCTTCACGCAGGCCAATCGGCTGCTGCGCCTGGATACGCC
GCTCGGGCCGAACGCGCTGCTGCCCGAGCGGTTGGACGTCGCCGAGCATCTCGACGATGGCGGCTTCCGGCTGGAGCTGA
CCGCGCTGTCGGATGACGCCGATCTCGATCCGGCGCGCCTGCTGGGGCAGCCCGTCCGGCTCGACCTGCTGACCCAGCAG
AGCCGCGGCGCGCTGCGGCCGTTCCATGGCCACGTCACGCGGTTCGAGCAGTTGGGCGCCAACGGCGGCCTGGTGCGCTA
CCGGCTGGTGATCGAACCCTGGCTGGCCTTCCTGCGCCACCGGCGCGACAGCTTCCTGTTCCAGGACCAGTCGGTGATCG
AAGTGATCGACAGCCTGTTCGGCGACTACAACGGCCAGGGCCGCCTGGCGCCGGCGTGGCGCTGGTCGCTGCGCGATGCC
TCGGTGTACACGCGCCGCAGCGTCATCACGCAATACGAAGAAAGCGATTTCGACTTCGTCACCCGCCTGCTGGCCGAGGA
AGGGCTGTTCTACTTCTTCGAGCACGAGGCGGTCGAGGGCGATGCGCTGGGCGTGCACCGCATGGTGATCGCCGATGCCA
ACGATGTCTTCACCGACAACGCGCAGGCCGCGATCCGCTTCGGCCGCGCCGATGCCACCGCCAATGAAGACGTGATCGAC
CGCTGGCAGGGCGTGCGGCGCTGGCAGACCAACGCCGTGTCGATCGCCAGTTGGGACTACCGCGCCAACACCCAGCGCAG
CGCCCAGCTCGGCGCGCAGCAGTGGCGCGACGGCATCCCGCAACTGACGCTGCAGGACACCGACTACCCCGGCCAGTACT
GGTTCGAAGACAGCGCCCAGGCCCAGCGCAGCGCGCGCCTGGTGATGGAAGCGCTGGAGCTGCGCGACAAGCAGTTCGAC
GGCGAAGGCAGCGTGCGCACGCTGGCGCTGGGCACGCGCTTCCAACTGGTTGATCATTATGAGCACGGCGACGACGGCGA
GGCGCGCTTCGCCGTGCTGTCCGTCCTGCACCGGGCACGCAACAACTTCAACGAGCGCTTTGGCCAGGTGCTGACGCAGG
CGCTGGGCGCGCTGTCCGGCGCCGACGCGCAAGACGCCGCGGGCAACGCGGGCACCGACGCCACGTTTTACCGTAACCAC
TTCACGGTCGTGCACGATACCGTGCCGTACCGCCCGCAGCAGCGCGATGCGCAGGGCCGTGCGCTGCATCCGCGTCCGAC
GGTCGAGGGCAGCCAGACCGCACTGGTGGTGGGCACCGGTGGCCCGGTGCATACGGACCGCGATCATCGCATCAAGGTCC
AGTTCCATTGGCAGCGCGGCGCACGCTCGGCCAGTCGGCAGCCGCATCCGGCCGGCGATGACAACGCCCGCGCGGAGGCC
GGCCTGGGCTGCTGGGTGCGCGTGGCGGCGCCGGTGGCCGGGCCCAACTGGGGCGGCGTGGCGTTGCCGCGCGTGGGCCA
GGAAGTGCTGGTGGAATTCGTGCAGGGCGATATCGACCGGCCGGTGGTGGTGGGCGCGGCCTATAACGGCAGCGGCCAGC
GCGACGCGCAGTACAACCAGAACCAGGCCGGCGCGGCGGGCGCGACCGGCAACGCGCCGGCCTGGTTTGCCGGCGACAGC
AAGAGCCAGGGGGCGTACGCGCACAACGCGGTGCTCTCCGGCATCAAGACGCAGGCGCTGGCCGGCAGCCAGACGGGCGC
CTCGGGTTACAGCCAGCTCGTGTTCGACGATACCGAGGGCCAGGGCCGCACGCAGCTGAGCACCACCCAGGCCGCCACCG
CGCTCACGCTGGGGCACCAGAAGGAACAGATCGACAGCGCCCGCCAGGCCGACCTAGGACACGGCGCGGCGCTGGCCACC
AACGACAGCGGCAGCGTGCGCGCCGGCGCGGGCCTGCTGCTCACCGCGCACGCCGCCGACACCGGCGCCGCGCTTCTCGA
CAGCGAAGGCGCCGCCAGCCAGATCGAAGCCCTCAGCGAACTGGCCGAATCGCTGGCCGACGTGGCCCGGAAGCAGCAGG
CCGGCCTGCCGGAAGAGCCTGCCGCGCAAGACCTGCCCGCGCTCAAGCAACTGCGGCACACCACCGAAGTGCTGCGCCAC
GCGGAAAGCGCAGGCAAAGGCGCCTCGGCCATCGCCTACAGCGAACCGCATCTGCAAGTCAGCGCGCCGAAGGGGATTGC
CGCGACCACGCCGGCCGACGCCGTGCTGGTGGCCGGCACCCAGATCGCATTGGCGGCCAAGCAGGACGCCAACCTCGCGG
CGGGCGGCAACCTGGCAATGGCCGTGGCCGACGGCCTGACCCTGTTCGCGCACGGCAAGGCGGTGGGCCAGTCATCCGAC
GCGGCCCGGGGCATCGCGATGCATGCGGCGAGCGGCAAGGTGAGCTTGAGCGCCCTGAAGGGCGAGAGCCGGCTGGTGGC
CGAGAAAGCCGTCACGGTGGCATCCACGCAGGGCAATGTCACGGCGGAGGGCAAGGCGCGCGTGCTGGTGAATGCGGCGG
GCGCGCAGATCCGGGTGACCAACGGGACGATTGAGCTGCATGCGCCGGGGAAGACGATCTTCAAGGGGGCGGGGCATGTG
TTTGTGGGGCCGGGTGGGGGGGCGGTGAGCAATACGCTGGCCCAGGGCAATCTGAAGGGTTGCGGCACCCAGGAAGGTAA
TGCCGCAACGAAAGGCACAGGGTCGATTTCGCGCTGA
ATGGTCTCACCGACCGAGCTGGCCAACCTGCTGCGGGCCGCCTTCACGCAGGCCAATCGGCTGCTGCGCCTGGATACGCC
GCTCGGGCCGAACGCGCTGCTGCCCGAGCGGTTGGACGTCGCCGAGCATCTCGACGATGGCGGCTTCCGGCTGGAGCTGA
CCGCGCTGTCGGATGACGCCGATCTCGATCCGGCGCGCCTGCTGGGGCAGCCCGTCCGGCTCGACCTGCTGACCCAGCAG
AGCCGCGGCGCGCTGCGGCCGTTCCATGGCCACGTCACGCGGTTCGAGCAGTTGGGCGCCAACGGCGGCCTGGTGCGCTA
CCGGCTGGTGATCGAACCCTGGCTGGCCTTCCTGCGCCACCGGCGCGACAGCTTCCTGTTCCAGGACCAGTCGGTGATCG
AAGTGATCGACAGCCTGTTCGGCGACTACAACGGCCAGGGCCGCCTGGCGCCGGCGTGGCGCTGGTCGCTGCGCGATGCC
TCGGTGTACACGCGCCGCAGCGTCATCACGCAATACGAAGAAAGCGATTTCGACTTCGTCACCCGCCTGCTGGCCGAGGA
AGGGCTGTTCTACTTCTTCGAGCACGAGGCGGTCGAGGGCGATGCGCTGGGCGTGCACCGCATGGTGATCGCCGATGCCA
ACGATGTCTTCACCGACAACGCGCAGGCCGCGATCCGCTTCGGCCGCGCCGATGCCACCGCCAATGAAGACGTGATCGAC
CGCTGGCAGGGCGTGCGGCGCTGGCAGACCAACGCCGTGTCGATCGCCAGTTGGGACTACCGCGCCAACACCCAGCGCAG
CGCCCAGCTCGGCGCGCAGCAGTGGCGCGACGGCATCCCGCAACTGACGCTGCAGGACACCGACTACCCCGGCCAGTACT
GGTTCGAAGACAGCGCCCAGGCCCAGCGCAGCGCGCGCCTGGTGATGGAAGCGCTGGAGCTGCGCGACAAGCAGTTCGAC
GGCGAAGGCAGCGTGCGCACGCTGGCGCTGGGCACGCGCTTCCAACTGGTTGATCATTATGAGCACGGCGACGACGGCGA
GGCGCGCTTCGCCGTGCTGTCCGTCCTGCACCGGGCACGCAACAACTTCAACGAGCGCTTTGGCCAGGTGCTGACGCAGG
CGCTGGGCGCGCTGTCCGGCGCCGACGCGCAAGACGCCGCGGGCAACGCGGGCACCGACGCCACGTTTTACCGTAACCAC
TTCACGGTCGTGCACGATACCGTGCCGTACCGCCCGCAGCAGCGCGATGCGCAGGGCCGTGCGCTGCATCCGCGTCCGAC
GGTCGAGGGCAGCCAGACCGCACTGGTGGTGGGCACCGGTGGCCCGGTGCATACGGACCGCGATCATCGCATCAAGGTCC
AGTTCCATTGGCAGCGCGGCGCACGCTCGGCCAGTCGGCAGCCGCATCCGGCCGGCGATGACAACGCCCGCGCGGAGGCC
GGCCTGGGCTGCTGGGTGCGCGTGGCGGCGCCGGTGGCCGGGCCCAACTGGGGCGGCGTGGCGTTGCCGCGCGTGGGCCA
GGAAGTGCTGGTGGAATTCGTGCAGGGCGATATCGACCGGCCGGTGGTGGTGGGCGCGGCCTATAACGGCAGCGGCCAGC
GCGACGCGCAGTACAACCAGAACCAGGCCGGCGCGGCGGGCGCGACCGGCAACGCGCCGGCCTGGTTTGCCGGCGACAGC
AAGAGCCAGGGGGCGTACGCGCACAACGCGGTGCTCTCCGGCATCAAGACGCAGGCGCTGGCCGGCAGCCAGACGGGCGC
CTCGGGTTACAGCCAGCTCGTGTTCGACGATACCGAGGGCCAGGGCCGCACGCAGCTGAGCACCACCCAGGCCGCCACCG
CGCTCACGCTGGGGCACCAGAAGGAACAGATCGACAGCGCCCGCCAGGCCGACCTAGGACACGGCGCGGCGCTGGCCACC
AACGACAGCGGCAGCGTGCGCGCCGGCGCGGGCCTGCTGCTCACCGCGCACGCCGCCGACACCGGCGCCGCGCTTCTCGA
CAGCGAAGGCGCCGCCAGCCAGATCGAAGCCCTCAGCGAACTGGCCGAATCGCTGGCCGACGTGGCCCGGAAGCAGCAGG
CCGGCCTGCCGGAAGAGCCTGCCGCGCAAGACCTGCCCGCGCTCAAGCAACTGCGGCACACCACCGAAGTGCTGCGCCAC
GCGGAAAGCGCAGGCAAAGGCGCCTCGGCCATCGCCTACAGCGAACCGCATCTGCAAGTCAGCGCGCCGAAGGGGATTGC
CGCGACCACGCCGGCCGACGCCGTGCTGGTGGCCGGCACCCAGATCGCATTGGCGGCCAAGCAGGACGCCAACCTCGCGG
CGGGCGGCAACCTGGCAATGGCCGTGGCCGACGGCCTGACCCTGTTCGCGCACGGCAAGGCGGTGGGCCAGTCATCCGAC
GCGGCCCGGGGCATCGCGATGCATGCGGCGAGCGGCAAGGTGAGCTTGAGCGCCCTGAAGGGCGAGAGCCGGCTGGTGGC
CGAGAAAGCCGTCACGGTGGCATCCACGCAGGGCAATGTCACGGCGGAGGGCAAGGCGCGCGTGCTGGTGAATGCGGCGG
GCGCGCAGATCCGGGTGACCAACGGGACGATTGAGCTGCATGCGCCGGGGAAGACGATCTTCAAGGGGGCGGGGCATGTG
TTTGTGGGGCCGGGTGGGGGGGCGGTGAGCAATACGCTGGCCCAGGGCAATCTGAAGGGTTGCGGCACCCAGGAAGGTAA
TGCCGCAACGAAAGGCACAGGGTCGATTTCGCGCTGA